Cluster: B38.bin_6_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: B38.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B38_contig_1193 | B38_contig_1193_176 | 193672 | 194037 | + | 2.A.7.34.3 |
| pfam | B38_contig_1193 | B38_contig_1193_177 | 194058 | 194786 | + | ATP_bind_3 |
| CAZyme | B38_contig_1193 | B38_contig_1193_178 | 195008 | 195997 | - | GH43_2 |
| CAZyme | B38_contig_1193 | B38_contig_1193_179 | 196065 | 197054 | - | GH43_2 |
| pfam | B38_contig_1193 | B38_contig_1193_180 | 197260 | 197754 | + | RNase_T | Rv2179c-like |
| pfam | B38_contig_1193 | B38_contig_1193_181 | 197849 | 200314 | - | FtsX | FtsX |
| TC | B38_contig_1193 | B38_contig_1193_182 | 200329 | 201027 | - | 3.A.1.122.2 |
Gene ID: B38_contig_1193_176
Type: TC
Location: 193672 - 194037 (+)
Type: TC
Location: 193672 - 194037 (+)
Gene ID: B38_contig_1193_177
Type: pfam
Location: 194058 - 194786 (+)
Type: pfam
Location: 194058 - 194786 (+)
Gene ID: B38_contig_1193_178
Type: CAZyme
Location: 195008 - 195997 (-)
Type: CAZyme
Location: 195008 - 195997 (-)
Gene ID: B38_contig_1193_179
Type: CAZyme
Location: 196065 - 197054 (-)
Type: CAZyme
Location: 196065 - 197054 (-)
Gene ID: B38_contig_1193_180
Type: pfam
Location: 197260 - 197754 (+)
Type: pfam
Location: 197260 - 197754 (+)
Gene ID: B38_contig_1193_181
Type: pfam
Location: 197849 - 200314 (-)
Type: pfam
Location: 197849 - 200314 (-)
Gene ID: B38_contig_1193_182
Type: TC
Location: 200329 - 201027 (-)
Type: TC
Location: 200329 - 201027 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella xylaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B38_contig_1193_176 | vegan > omnivore | 1.32799 | 0.01269 |
| B38_contig_1193_176 | vegetarian > omnivore | 2.10339 | 0.00672 |
| B38_contig_1193_177 | vegan > omnivore | 1.47799 | 0.01269 |
| B38_contig_1193_177 | vegetarian > omnivore | 1.97437 | 0.00672 |
| B38_contig_1193_178 | vegan > omnivore | 1.26401 | 0.01269 |
| B38_contig_1193_178 | vegetarian > omnivore | 1.63789 | 0.00672 |
| B38_contig_1193_180 | vegetarian > omnivore | 1.57055 | 0.00672 |
| B38_contig_1193_180 | vegan > omnivore | 1.47574 | 0.01269 |
| B38_contig_1193_182 | vegetarian > omnivore | 1.39032 | 0.00672 |
| B38_contig_1193_182 | vegan > omnivore | 1.13961 | 0.01269 |