Cluster: B38.bin_6_CGC21
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: B38.bin_6
- CGC Family ID: CGCFAM_04937
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B38_contig_1193 | B38_contig_1193_1384 | 1703900 | 1707169 | - | 1.B.14.6.2 |
| pfam | B38_contig_1193 | B38_contig_1193_1385 | 1707402 | 1708778 | - | Alk_phosphatase |
| NULL(UNKNOWN) | B38_contig_1193 | B38_contig_1193_1386 | 1709077 | 1710417 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B38_contig_1193 | B38_contig_1193_1387 | 1710543 | 1710893 | + | 1.E.14.1.13 |
| TC | B38_contig_1193 | B38_contig_1193_1388 | 1710874 | 1711569 | + | 2.A.122.1.1 |
| NULL(UNKNOWN) | B38_contig_1193 | B38_contig_1193_1389 | 1711650 | 1715324 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B38_contig_1193 | B38_contig_1193_1390 | 1715554 | 1718355 | - | CBM13 |
| CAZyme | B38_contig_1193 | B38_contig_1193_1391 | 1718627 | 1722991 | - | CBM67 | GH78 |
| TF | B38_contig_1193 | B38_contig_1193_1392 | 1723121 | 1727089 | - | HTH_AraC |
| NULL(UNKNOWN) | B38_contig_1193 | B38_contig_1193_1393 | 1727220 | 1729397 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B38_contig_1193 | B38_contig_1193_1394 | 1729449 | 1731920 | - | GH2 |
Gene ID: B38_contig_1193_1384
Type: TC
Location: 1703900 - 1707169 (-)
Type: TC
Location: 1703900 - 1707169 (-)
Gene ID: B38_contig_1193_1385
Type: pfam
Location: 1707402 - 1708778 (-)
Type: pfam
Location: 1707402 - 1708778 (-)
Gene ID: B38_contig_1193_1386
Type:
Location: 1709077 - 1710417 (+)
Type:
Location: 1709077 - 1710417 (+)
Gene ID: B38_contig_1193_1387
Type: TC
Location: 1710543 - 1710893 (+)
Type: TC
Location: 1710543 - 1710893 (+)
Gene ID: B38_contig_1193_1388
Type: TC
Location: 1710874 - 1711569 (+)
Type: TC
Location: 1710874 - 1711569 (+)
Gene ID: B38_contig_1193_1389
Type:
Location: 1711650 - 1715324 (-)
Type:
Location: 1711650 - 1715324 (-)
Gene ID: B38_contig_1193_1390
Type: CAZyme
Location: 1715554 - 1718355 (-)
Type: CAZyme
Location: 1715554 - 1718355 (-)
Gene ID: B38_contig_1193_1391
Type: CAZyme
Location: 1718627 - 1722991 (-)
Type: CAZyme
Location: 1718627 - 1722991 (-)
Gene ID: B38_contig_1193_1392
Type: TF
Location: 1723121 - 1727089 (-)
Type: TF
Location: 1723121 - 1727089 (-)
Gene ID: B38_contig_1193_1393
Type:
Location: 1727220 - 1729397 (-)
Type:
Location: 1727220 - 1729397 (-)
Gene ID: B38_contig_1193_1394
Type: CAZyme
Location: 1729449 - 1731920 (-)
Type: CAZyme
Location: 1729449 - 1731920 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella xylaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B38_contig_1193_1386 | vegetarian > omnivore | 8.27377 | 0.00672 |
| B38_contig_1193_1386 | vegan > omnivore | 5.90629 | 0.01269 |
| B38_contig_1193_1390 | vegan > omnivore | 1.01330 | 0.01269 |
| B38_contig_1193_1391 | vegan > omnivore | 1.13275 | 0.01269 |
| B38_contig_1193_1393 | vegetarian > omnivore | 1.06061 | 0.00672 |
| B38_contig_1193_1394 | vegetarian > omnivore | 1.28758 | 0.00672 |
| B38_contig_1193_1394 | vegan > omnivore | 1.22371 | 0.01269 |