Cluster: B36.bin_14_CGC30
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 8
- Substrate:
- Genome ID: B36.bin_14
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B36_contig_407 | B36_contig_407_877 | 956352 | 957746 | + | AA7 |
| pfam | B36_contig_407 | B36_contig_407_878 | 958554 | 959744 | - | Transposase_mut | MULE |
| TC | B36_contig_407 | B36_contig_407_879 | 960803 | 962566 | + | 9.B.33.1.1 |
| TF | B36_contig_407 | B36_contig_407_880 | 962570 | 964135 | + | HTH_AraC | HTH_AraC |
| CAZyme | B36_contig_407 | B36_contig_407_881 | 964240 | 965775 | + | GH31_19 |
| STP | B36_contig_407 | B36_contig_407_882 | 965999 | 967297 | + | SBP_bac_1 |
| TC | B36_contig_407 | B36_contig_407_883 | 967362 | 968243 | + | 3.A.1.1.20 |
| TC | B36_contig_407 | B36_contig_407_884 | 968240 | 969082 | + | 3.A.1.1.42 |
| CAZyme | B36_contig_407 | B36_contig_407_885 | 969129 | 971156 | + | GH16_24 |
| CAZyme | B36_contig_407 | B36_contig_407_886 | 972174 | 973454 | - | GH125 |
| TF | B36_contig_407 | B36_contig_407_887 | 973462 | 974562 | - | GntR |
| CAZyme | B36_contig_407 | B36_contig_407_888 | 974594 | 976330 | - | GH20 |
| CAZyme | B36_contig_407 | B36_contig_407_889 | 976455 | 978983 | - | GH2 |
| STP | B36_contig_407 | B36_contig_407_890 | 979066 | 980562 | - | SBP_bac_1 |
| TC | B36_contig_407 | B36_contig_407_891 | 980641 | 981522 | - | 3.A.1.1.10 |
| TC | B36_contig_407 | B36_contig_407_892 | 981522 | 982277 | - | 3.A.1.1.9 |
| TF | B36_contig_407 | B36_contig_407_893 | 984064 | 985179 | + | LacI |
| STP | B36_contig_407 | B36_contig_407_894 | 985176 | 986516 | + | SBP_bac_1 |
| TC | B36_contig_407 | B36_contig_407_895 | 986583 | 987491 | + | 3.A.1.1.18 |
| TC | B36_contig_407 | B36_contig_407_896 | 987503 | 988393 | + | 3.A.1.1.18 |
| NULL(UNKNOWN) | B36_contig_407 | B36_contig_407_897 | 988401 | 989594 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | B36_contig_407 | B36_contig_407_898 | 989591 | 991018 | + | S1_27 |
| CAZyme | B36_contig_407 | B36_contig_407_899 | 991015 | 993024 | + | PL12_1 |
| CAZyme | B36_contig_407 | B36_contig_407_900 | 993711 | 994928 | + | GH88 |
Gene ID: B36_contig_407_877
Type: CAZyme
Location: 956352 - 957746 (+)
Type: CAZyme
Location: 956352 - 957746 (+)
Gene ID: B36_contig_407_878
Type: pfam
Location: 958554 - 959744 (-)
Type: pfam
Location: 958554 - 959744 (-)
Gene ID: B36_contig_407_879
Type: TC
Location: 960803 - 962566 (+)
Type: TC
Location: 960803 - 962566 (+)
Gene ID: B36_contig_407_880
Type: TF
Location: 962570 - 964135 (+)
Type: TF
Location: 962570 - 964135 (+)
Gene ID: B36_contig_407_881
Type: CAZyme
Location: 964240 - 965775 (+)
Type: CAZyme
Location: 964240 - 965775 (+)
Gene ID: B36_contig_407_882
Type: STP
Location: 965999 - 967297 (+)
Type: STP
Location: 965999 - 967297 (+)
Gene ID: B36_contig_407_883
Type: TC
Location: 967362 - 968243 (+)
Type: TC
Location: 967362 - 968243 (+)
Gene ID: B36_contig_407_884
Type: TC
Location: 968240 - 969082 (+)
Type: TC
Location: 968240 - 969082 (+)
Gene ID: B36_contig_407_885
Type: CAZyme
Location: 969129 - 971156 (+)
Type: CAZyme
Location: 969129 - 971156 (+)
Gene ID: B36_contig_407_886
Type: CAZyme
Location: 972174 - 973454 (-)
Type: CAZyme
Location: 972174 - 973454 (-)
Gene ID: B36_contig_407_887
Type: TF
Location: 973462 - 974562 (-)
Type: TF
Location: 973462 - 974562 (-)
Gene ID: B36_contig_407_888
Type: CAZyme
Location: 974594 - 976330 (-)
Type: CAZyme
Location: 974594 - 976330 (-)
Gene ID: B36_contig_407_889
Type: CAZyme
Location: 976455 - 978983 (-)
Type: CAZyme
Location: 976455 - 978983 (-)
Gene ID: B36_contig_407_890
Type: STP
Location: 979066 - 980562 (-)
Type: STP
Location: 979066 - 980562 (-)
Gene ID: B36_contig_407_891
Type: TC
Location: 980641 - 981522 (-)
Type: TC
Location: 980641 - 981522 (-)
Gene ID: B36_contig_407_892
Type: TC
Location: 981522 - 982277 (-)
Type: TC
Location: 981522 - 982277 (-)
Gene ID: B36_contig_407_893
Type: TF
Location: 984064 - 985179 (+)
Type: TF
Location: 984064 - 985179 (+)
Gene ID: B36_contig_407_894
Type: STP
Location: 985176 - 986516 (+)
Type: STP
Location: 985176 - 986516 (+)
Gene ID: B36_contig_407_895
Type: TC
Location: 986583 - 987491 (+)
Type: TC
Location: 986583 - 987491 (+)
Gene ID: B36_contig_407_896
Type: TC
Location: 987503 - 988393 (+)
Type: TC
Location: 987503 - 988393 (+)
Gene ID: B36_contig_407_897
Type:
Location: 988401 - 989594 (+)
Type:
Location: 988401 - 989594 (+)
Gene ID: B36_contig_407_898
Type: sulfatase
Location: 989591 - 991018 (+)
Type: sulfatase
Location: 989591 - 991018 (+)
Gene ID: B36_contig_407_899
Type: CAZyme
Location: 991015 - 993024 (+)
Type: CAZyme
Location: 991015 - 993024 (+)
Gene ID: B36_contig_407_900
Type: CAZyme
Location: 993711 - 994928 (+)
Type: CAZyme
Location: 993711 - 994928 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruthenibacterium
Species
Ruthenibacterium lactatiformans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B36_contig_407_878 | vegetarian > vegan | 1.34925 | 0.00364 |
| B36_contig_407_893 | vegan > omnivore | 2.46883 | 0.02463 |
| B36_contig_407_897 | vegan > omnivore | 1.51273 | 0.02463 |