Cluster: B15.bin_8_CGC38
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: B15.bin_8
- CGC Family ID: CGCFAM_01935
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1144 | B15_contig_1144_423 | 580167 | 581687 | + | 3.A.1.2.1 |
| TC | B15_contig_1144 | B15_contig_1144_424 | 581702 | 582706 | + | 3.A.1.2.1 |
| TC | B15_contig_1144 | B15_contig_1144_425 | 582810 | 583793 | + | 3.A.1.2.6 |
| CAZyme | B15_contig_1144 | B15_contig_1144_426 | 584054 | 585091 | - | GH43_22 |
| TF | B15_contig_1144 | B15_contig_1144_427 | 585157 | 586260 | - | LacI |
| CAZyme | B15_contig_1144 | B15_contig_1144_428 | 586528 | 587937 | + | GH27 |
| CAZyme | B15_contig_1144 | B15_contig_1144_429 | 587954 | 590275 | + | GH51_2 |
| TC | B15_contig_1144 | B15_contig_1144_430 | 590300 | 591856 | + | 2.A.2.5.1 |
| pfam | B15_contig_1144 | B15_contig_1144_431 | 591867 | 592823 | + | TatD_DNase |
| TC | B15_contig_1144 | B15_contig_1144_432 | 592988 | 595165 | + | 2.A.72.1.3 |
| peptidase | B15_contig_1144 | B15_contig_1144_433 | 595261 | 596181 | + | C44.UPW |
| STP | B15_contig_1144 | B15_contig_1144_434 | 596312 | 597166 | + | HD |
| TC | B15_contig_1144 | B15_contig_1144_435 | 597353 | 598462 | - | 3.A.1.122.13 |
Gene ID: B15_contig_1144_423
Type: TC
Location: 580167 - 581687 (+)
Type: TC
Location: 580167 - 581687 (+)
Gene ID: B15_contig_1144_424
Type: TC
Location: 581702 - 582706 (+)
Type: TC
Location: 581702 - 582706 (+)
Gene ID: B15_contig_1144_425
Type: TC
Location: 582810 - 583793 (+)
Type: TC
Location: 582810 - 583793 (+)
Gene ID: B15_contig_1144_426
Type: CAZyme
Location: 584054 - 585091 (-)
Type: CAZyme
Location: 584054 - 585091 (-)
Gene ID: B15_contig_1144_427
Type: TF
Location: 585157 - 586260 (-)
Type: TF
Location: 585157 - 586260 (-)
Gene ID: B15_contig_1144_428
Type: CAZyme
Location: 586528 - 587937 (+)
Type: CAZyme
Location: 586528 - 587937 (+)
Gene ID: B15_contig_1144_429
Type: CAZyme
Location: 587954 - 590275 (+)
Type: CAZyme
Location: 587954 - 590275 (+)
Gene ID: B15_contig_1144_430
Type: TC
Location: 590300 - 591856 (+)
Type: TC
Location: 590300 - 591856 (+)
Gene ID: B15_contig_1144_431
Type: pfam
Location: 591867 - 592823 (+)
Type: pfam
Location: 591867 - 592823 (+)
Gene ID: B15_contig_1144_432
Type: TC
Location: 592988 - 595165 (+)
Type: TC
Location: 592988 - 595165 (+)
Gene ID: B15_contig_1144_433
Type: peptidase
Location: 595261 - 596181 (+)
Type: peptidase
Location: 595261 - 596181 (+)
Gene ID: B15_contig_1144_434
Type: STP
Location: 596312 - 597166 (+)
Type: STP
Location: 596312 - 597166 (+)
Gene ID: B15_contig_1144_435
Type: TC
Location: 597353 - 598462 (-)
Type: TC
Location: 597353 - 598462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium dentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.