Cluster: B15.bin_8_CGC33
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: B15.bin_8
- CGC Family ID: CGCFAM_01326
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1144 | B15_contig_1144_290 | 394778 | 397768 | + | 3.A.3.2.21 |
| pfam | B15_contig_1144 | B15_contig_1144_291 | 397922 | 398503 | - | dUTPase | DCD_N | DCD_C | DCD |
| peptidase | B15_contig_1144 | B15_contig_1144_292 | 398614 | 399372 | - | S09.UPW |
| TC | B15_contig_1144 | B15_contig_1144_293 | 399660 | 401732 | - | 2.A.36.3.2 |
| pfam | B15_contig_1144 | B15_contig_1144_294 | 401832 | 402269 | + | dCMP_cyt_deam_1 | MafB19-deam |
| CAZyme | B15_contig_1144 | B15_contig_1144_295 | 402427 | 404721 | + | GH36 |
| pfam | B15_contig_1144 | B15_contig_1144_296 | 405170 | 406372 | - | ROK |
| STP | B15_contig_1144 | B15_contig_1144_297 | 406555 | 407847 | + | SBP_bac_1 |
| TC | B15_contig_1144 | B15_contig_1144_298 | 407862 | 408776 | + | 3.A.1.1.28 |
| TC | B15_contig_1144 | B15_contig_1144_299 | 408797 | 409672 | + | 3.A.1.1.28 |
| TF | B15_contig_1144 | B15_contig_1144_300 | 409900 | 410919 | - | LacI |
| STP | B15_contig_1144 | B15_contig_1144_301 | 411247 | 412572 | + | SBP_bac_1 |
| TC | B15_contig_1144 | B15_contig_1144_302 | 412710 | 413609 | + | 3.A.1.1.36 |
| TC | B15_contig_1144 | B15_contig_1144_303 | 413655 | 414440 | + | 3.A.1.1.24 |
| CAZyme | B15_contig_1144 | B15_contig_1144_304 | 414447 | 416177 | + | GH13_30 |
| CAZyme | B15_contig_1144 | B15_contig_1144_305 | 416295 | 418115 | + | GH13_31 |
Gene ID: B15_contig_1144_290
Type: TC
Location: 394778 - 397768 (+)
Type: TC
Location: 394778 - 397768 (+)
Gene ID: B15_contig_1144_291
Type: pfam
Location: 397922 - 398503 (-)
Type: pfam
Location: 397922 - 398503 (-)
Gene ID: B15_contig_1144_292
Type: peptidase
Location: 398614 - 399372 (-)
Type: peptidase
Location: 398614 - 399372 (-)
Gene ID: B15_contig_1144_293
Type: TC
Location: 399660 - 401732 (-)
Type: TC
Location: 399660 - 401732 (-)
Gene ID: B15_contig_1144_294
Type: pfam
Location: 401832 - 402269 (+)
Type: pfam
Location: 401832 - 402269 (+)
Gene ID: B15_contig_1144_295
Type: CAZyme
Location: 402427 - 404721 (+)
Type: CAZyme
Location: 402427 - 404721 (+)
Gene ID: B15_contig_1144_296
Type: pfam
Location: 405170 - 406372 (-)
Type: pfam
Location: 405170 - 406372 (-)
Gene ID: B15_contig_1144_297
Type: STP
Location: 406555 - 407847 (+)
Type: STP
Location: 406555 - 407847 (+)
Gene ID: B15_contig_1144_298
Type: TC
Location: 407862 - 408776 (+)
Type: TC
Location: 407862 - 408776 (+)
Gene ID: B15_contig_1144_299
Type: TC
Location: 408797 - 409672 (+)
Type: TC
Location: 408797 - 409672 (+)
Gene ID: B15_contig_1144_300
Type: TF
Location: 409900 - 410919 (-)
Type: TF
Location: 409900 - 410919 (-)
Gene ID: B15_contig_1144_301
Type: STP
Location: 411247 - 412572 (+)
Type: STP
Location: 411247 - 412572 (+)
Gene ID: B15_contig_1144_302
Type: TC
Location: 412710 - 413609 (+)
Type: TC
Location: 412710 - 413609 (+)
Gene ID: B15_contig_1144_303
Type: TC
Location: 413655 - 414440 (+)
Type: TC
Location: 413655 - 414440 (+)
Gene ID: B15_contig_1144_304
Type: CAZyme
Location: 414447 - 416177 (+)
Type: CAZyme
Location: 414447 - 416177 (+)
Gene ID: B15_contig_1144_305
Type: CAZyme
Location: 416295 - 418115 (+)
Type: CAZyme
Location: 416295 - 418115 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium dentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.