dbCAN HGM

Cluster: B15.bin_8_CGC30

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 28
CAZyme Count: 8
Substrate:
Genome ID: B15.bin_8
CGC Family ID: CGCFAM_03417
Continent: Asia
Source Study: Jin et al., 2023 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	B15_contig_1144	B15_contig_1144_129	176414	177364	-	3.A.1.1.23
TC	B15_contig_1144	B15_contig_1144_130	177371	178495	-	3.A.1.1.23
STP	B15_contig_1144	B15_contig_1144_131	178632	179942	-	SBP_bac_1
TF	B15_contig_1144	B15_contig_1144_132	180419	181432	-	LacI
TC	B15_contig_1144	B15_contig_1144_133	181856	183361	+	2.A.3.1.3
CAZyme	B15_contig_1144	B15_contig_1144_134	183437	185629	-	GH36
NULL(UNKNOWN)	B15_contig_1144	B15_contig_1144_135	185818	186543	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	B15_contig_1144	B15_contig_1144_136	186610	187233	+	DUF624
CAZyme	B15_contig_1144	B15_contig_1144_137	187220	188236	-	GH43_34
TF	B15_contig_1144	B15_contig_1144_138	188485	189519	-	LacI
CAZyme	B15_contig_1144	B15_contig_1144_139	189752	192463	-	GH2
TC	B15_contig_1144	B15_contig_1144_140	192572	193462	-	3.A.1.1.18
TC	B15_contig_1144	B15_contig_1144_141	193462	194523	-	3.A.1.1.20
STP	B15_contig_1144	B15_contig_1144_142	194651	195628	-	SBP_bac_1
CAZyme	B15_contig_1144	B15_contig_1144_143	196493	197863	-	GH1
CAZyme	B15_contig_1144	B15_contig_1144_144	198037	199098	+	CE2
CAZyme	B15_contig_1144	B15_contig_1144_145	199162	200964	-	CE20
pfam	B15_contig_1144	B15_contig_1144_146	201266	202315	-	KARI_C \| 2-Hacid_dh_C \| NAD_binding_2 \| F420_oxidored \| KARI_N
pfam	B15_contig_1144	B15_contig_1144_147	202626	203678	-	KARI_C \| 2-Hacid_dh_C \| NAD_binding_2 \| F420_oxidored \| KARI_N
TC	B15_contig_1144	B15_contig_1144_148	203935	205284	-	2.A.1.6.10
pfam	B15_contig_1144	B15_contig_1144_149	205688	207268	-	MFS_1
TC	B15_contig_1144	B15_contig_1144_150	207377	208939	-	2.A.1.2.93
TC	B15_contig_1144	B15_contig_1144_151	209228	210085	-	3.A.1.1.45
TC	B15_contig_1144	B15_contig_1144_152	210085	210963	-	3.A.1.1.45
pfam	B15_contig_1144	B15_contig_1144_153	211048	212337	-	SBP_bac_1 \| SBP_bac_8
CAZyme	B15_contig_1144	B15_contig_1144_154	212670	214274	+	GH13_44
pfam	B15_contig_1144	B15_contig_1144_155	214269	214925	-	DUF624
CAZyme	B15_contig_1144	B15_contig_1144_156	215039	216553	-	GH13_18

Gene ID: B15_contig_1144_129
Type: TC
Location: 176414 - 177364 (-)

Gene ID: B15_contig_1144_130
Type: TC
Location: 177371 - 178495 (-)

Gene ID: B15_contig_1144_131
Type: STP
Location: 178632 - 179942 (-)

Gene ID: B15_contig_1144_132
Type: TF
Location: 180419 - 181432 (-)

Gene ID: B15_contig_1144_133
Type: TC
Location: 181856 - 183361 (+)

Gene ID: B15_contig_1144_134
Type: CAZyme
Location: 183437 - 185629 (-)

Gene ID: B15_contig_1144_135
Type:
Location: 185818 - 186543 (+)

Gene ID: B15_contig_1144_136
Type: pfam
Location: 186610 - 187233 (+)

Gene ID: B15_contig_1144_137
Type: CAZyme
Location: 187220 - 188236 (-)

Gene ID: B15_contig_1144_138
Type: TF
Location: 188485 - 189519 (-)

Gene ID: B15_contig_1144_139
Type: CAZyme
Location: 189752 - 192463 (-)

Gene ID: B15_contig_1144_140
Type: TC
Location: 192572 - 193462 (-)

Gene ID: B15_contig_1144_141
Type: TC
Location: 193462 - 194523 (-)

Gene ID: B15_contig_1144_142
Type: STP
Location: 194651 - 195628 (-)

Gene ID: B15_contig_1144_143
Type: CAZyme
Location: 196493 - 197863 (-)

Gene ID: B15_contig_1144_144
Type: CAZyme
Location: 198037 - 199098 (+)

Gene ID: B15_contig_1144_145
Type: CAZyme
Location: 199162 - 200964 (-)

Gene ID: B15_contig_1144_146
Type: pfam
Location: 201266 - 202315 (-)

Gene ID: B15_contig_1144_147
Type: pfam
Location: 202626 - 203678 (-)

Gene ID: B15_contig_1144_148
Type: TC
Location: 203935 - 205284 (-)

Gene ID: B15_contig_1144_149
Type: pfam
Location: 205688 - 207268 (-)

Gene ID: B15_contig_1144_150
Type: TC
Location: 207377 - 208939 (-)

Gene ID: B15_contig_1144_151
Type: TC
Location: 209228 - 210085 (-)

Gene ID: B15_contig_1144_152
Type: TC
Location: 210085 - 210963 (-)

Gene ID: B15_contig_1144_153
Type: pfam
Location: 211048 - 212337 (-)

Gene ID: B15_contig_1144_154
Type: CAZyme
Location: 212670 - 214274 (+)

Gene ID: B15_contig_1144_155
Type: pfam
Location: 214269 - 214925 (-)

Gene ID: B15_contig_1144_156
Type: CAZyme
Location: 215039 - 216553 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Actinomycetota

→

Class

Actinomycetes

→

Order

Actinomycetales

→

Family

Bifidobacteriaceae

→

Genus

Bifidobacterium

→

Species

Bifidobacterium dentium

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
B15_contig_1144_138	vegan > omnivore	1.37867	0.00918
B15_contig_1144_151	vegetarian > omnivore	1.02554	0.02538

Gene ID	Condition Pair	log2FC	FDR P-value
B15_contig_1144_155	vegan > omnivore	5.84344	0.04003

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