Cluster: B15.CMAG_2_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: B15.CMAG_2
- CGC Family ID: CGCFAM_02534
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_433 | 470098 | 471282 | + | 2.A.1.2.9 |
| NULL(UNKNOWN) | B15_contig_1 | B15_contig_1_434 | 471290 | 471787 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B15_contig_1 | B15_contig_1_435 | 471784 | 472146 | - | DUF202 |
| TC | B15_contig_1 | B15_contig_1_436 | 472136 | 472483 | - | 9.B.51.1.1 |
| sulfatase | B15_contig_1 | B15_contig_1_437 | 472543 | 474036 | - | S1_43 |
| TC | B15_contig_1 | B15_contig_1_438 | 474033 | 475748 | - | 2.A.21.3.21 |
| TF | B15_contig_1 | B15_contig_1_439 | 475915 | 476808 | + | HTH_AraC | HTH_AraC |
| CAZyme | B15_contig_1 | B15_contig_1_440 | 476805 | 478127 | - | GH4 |
| TC | B15_contig_1 | B15_contig_1_441 | 478127 | 479743 | - | 4.A.1.1.10 |
| TF | B15_contig_1 | B15_contig_1_442 | 480039 | 480755 | + | GntR |
| TC | B15_contig_1 | B15_contig_1_443 | 480752 | 482413 | - | 2.A.81.1.5 |
Gene ID: B15_contig_1_433
Type: TC
Location: 470098 - 471282 (+)
Type: TC
Location: 470098 - 471282 (+)
Gene ID: B15_contig_1_434
Type:
Location: 471290 - 471787 (-)
Type:
Location: 471290 - 471787 (-)
Gene ID: B15_contig_1_435
Type: pfam
Location: 471784 - 472146 (-)
Type: pfam
Location: 471784 - 472146 (-)
Gene ID: B15_contig_1_436
Type: TC
Location: 472136 - 472483 (-)
Type: TC
Location: 472136 - 472483 (-)
Gene ID: B15_contig_1_437
Type: sulfatase
Location: 472543 - 474036 (-)
Type: sulfatase
Location: 472543 - 474036 (-)
Gene ID: B15_contig_1_438
Type: TC
Location: 474033 - 475748 (-)
Type: TC
Location: 474033 - 475748 (-)
Gene ID: B15_contig_1_439
Type: TF
Location: 475915 - 476808 (+)
Type: TF
Location: 475915 - 476808 (+)
Gene ID: B15_contig_1_440
Type: CAZyme
Location: 476805 - 478127 (-)
Type: CAZyme
Location: 476805 - 478127 (-)
Gene ID: B15_contig_1_441
Type: TC
Location: 478127 - 479743 (-)
Type: TC
Location: 478127 - 479743 (-)
Gene ID: B15_contig_1_442
Type: TF
Location: 480039 - 480755 (+)
Type: TF
Location: 480039 - 480755 (+)
Gene ID: B15_contig_1_443
Type: TC
Location: 480752 - 482413 (-)
Type: TC
Location: 480752 - 482413 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B15_contig_1_435 | omnivore > vegetarian | 2.09069 | 0.04407 |
| B15_contig_1_436 | omnivore > vegetarian | 1.82655 | 0.04407 |
| B15_contig_1_440 | vegan > omnivore | 1.45807 | 0.02393 |