Cluster: B15.CMAG_2_CGC56
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 2
- Substrate:
- Genome ID: B15.CMAG_2
- CGC Family ID: CGCFAM_04913
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_4295 | 4639231 | 4640379 | + | 8.A.4.1.1 |
| TC | B15_contig_1 | B15_contig_1_4296 | 4640403 | 4642079 | + | 1.B.18.1.2 |
| pfam | B15_contig_1 | B15_contig_1_4297 | 4642089 | 4642829 | + | CTP_transf_3 | NTP_transf_3 |
| CAZyme | B15_contig_1 | B15_contig_1_4298 | 4642826 | 4644853 | + | GT107 | GT107 |
| TC | B15_contig_1 | B15_contig_1_4299 | 4644888 | 4646087 | + | 9.A.41.1.3 |
| NULL(UNKNOWN) | B15_contig_1 | B15_contig_1_4300 | 4646133 | 4646921 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B15_contig_1 | B15_contig_1_4301 | 4647016 | 4650765 | - | Glyphos_transf |
| CAZyme | B15_contig_1 | B15_contig_1_4302 | 4650787 | 4651800 | - | GT2 |
| TC | B15_contig_1 | B15_contig_1_4303 | 4651797 | 4652453 | - | 3.A.1.101.1 |
| TC | B15_contig_1 | B15_contig_1_4304 | 4652450 | 4653226 | - | 3.A.1.101.1 |
| TC | B15_contig_1 | B15_contig_1_4305 | 4654283 | 4654819 | - | 3.A.15.3.1 |
| pfam | B15_contig_1 | B15_contig_1_4306 | 4654821 | 4655999 | - | T2SSL | GspL_C |
| TC | B15_contig_1 | B15_contig_1_4307 | 4655996 | 4656973 | - | 3.A.15.1.1 |
| TC | B15_contig_1 | B15_contig_1_4308 | 4656970 | 4657575 | - | 3.A.15.1.1 |
| TC | B15_contig_1 | B15_contig_1_4309 | 4657572 | 4657943 | - | 3.A.15.1.1 |
| pfam | B15_contig_1 | B15_contig_1_4310 | 4657940 | 4658503 | - | N_methyl | GspH |
| TC | B15_contig_1 | B15_contig_1_4311 | 4658507 | 4658962 | - | 3.A.15.1.1 |
| TC | B15_contig_1 | B15_contig_1_4312 | 4658979 | 4660202 | - | 3.A.15.1.1 |
| TC | B15_contig_1 | B15_contig_1_4313 | 4660202 | 4661695 | - | 3.A.15.1.1 |
| TC | B15_contig_1 | B15_contig_1_4314 | 4661695 | 4663755 | - | 1.B.22.1.1 |
| pfam | B15_contig_1 | B15_contig_1_4315 | 4663785 | 4664615 | - | T2SSC |
| pfam | B15_contig_1 | B15_contig_1_4316 | 4664762 | 4665172 | - | T2SSS_2 |
| TC | B15_contig_1 | B15_contig_1_4317 | 4665238 | 4666047 | - | 3.A.15.2.1 |
| peptidase | B15_contig_1 | B15_contig_1_4318 | 4666177 | 4670742 | - | M98.001 |
| TC | B15_contig_1 | B15_contig_1_4319 | 4671226 | 4672908 | - | 2.A.14.1.2 |
Gene ID: B15_contig_1_4295
Type: TC
Location: 4639231 - 4640379 (+)
Type: TC
Location: 4639231 - 4640379 (+)
Gene ID: B15_contig_1_4296
Type: TC
Location: 4640403 - 4642079 (+)
Type: TC
Location: 4640403 - 4642079 (+)
Gene ID: B15_contig_1_4297
Type: pfam
Location: 4642089 - 4642829 (+)
Type: pfam
Location: 4642089 - 4642829 (+)
Gene ID: B15_contig_1_4298
Type: CAZyme
Location: 4642826 - 4644853 (+)
Type: CAZyme
Location: 4642826 - 4644853 (+)
Gene ID: B15_contig_1_4299
Type: TC
Location: 4644888 - 4646087 (+)
Type: TC
Location: 4644888 - 4646087 (+)
Gene ID: B15_contig_1_4300
Type:
Location: 4646133 - 4646921 (-)
Type:
Location: 4646133 - 4646921 (-)
Gene ID: B15_contig_1_4301
Type: pfam
Location: 4647016 - 4650765 (-)
Type: pfam
Location: 4647016 - 4650765 (-)
Gene ID: B15_contig_1_4302
Type: CAZyme
Location: 4650787 - 4651800 (-)
Type: CAZyme
Location: 4650787 - 4651800 (-)
Gene ID: B15_contig_1_4303
Type: TC
Location: 4651797 - 4652453 (-)
Type: TC
Location: 4651797 - 4652453 (-)
Gene ID: B15_contig_1_4304
Type: TC
Location: 4652450 - 4653226 (-)
Type: TC
Location: 4652450 - 4653226 (-)
Gene ID: B15_contig_1_4305
Type: TC
Location: 4654283 - 4654819 (-)
Type: TC
Location: 4654283 - 4654819 (-)
Gene ID: B15_contig_1_4306
Type: pfam
Location: 4654821 - 4655999 (-)
Type: pfam
Location: 4654821 - 4655999 (-)
Gene ID: B15_contig_1_4307
Type: TC
Location: 4655996 - 4656973 (-)
Type: TC
Location: 4655996 - 4656973 (-)
Gene ID: B15_contig_1_4308
Type: TC
Location: 4656970 - 4657575 (-)
Type: TC
Location: 4656970 - 4657575 (-)
Gene ID: B15_contig_1_4309
Type: TC
Location: 4657572 - 4657943 (-)
Type: TC
Location: 4657572 - 4657943 (-)
Gene ID: B15_contig_1_4310
Type: pfam
Location: 4657940 - 4658503 (-)
Type: pfam
Location: 4657940 - 4658503 (-)
Gene ID: B15_contig_1_4311
Type: TC
Location: 4658507 - 4658962 (-)
Type: TC
Location: 4658507 - 4658962 (-)
Gene ID: B15_contig_1_4312
Type: TC
Location: 4658979 - 4660202 (-)
Type: TC
Location: 4658979 - 4660202 (-)
Gene ID: B15_contig_1_4313
Type: TC
Location: 4660202 - 4661695 (-)
Type: TC
Location: 4660202 - 4661695 (-)
Gene ID: B15_contig_1_4314
Type: TC
Location: 4661695 - 4663755 (-)
Type: TC
Location: 4661695 - 4663755 (-)
Gene ID: B15_contig_1_4315
Type: pfam
Location: 4663785 - 4664615 (-)
Type: pfam
Location: 4663785 - 4664615 (-)
Gene ID: B15_contig_1_4316
Type: pfam
Location: 4664762 - 4665172 (-)
Type: pfam
Location: 4664762 - 4665172 (-)
Gene ID: B15_contig_1_4317
Type: TC
Location: 4665238 - 4666047 (-)
Type: TC
Location: 4665238 - 4666047 (-)
Gene ID: B15_contig_1_4318
Type: peptidase
Location: 4666177 - 4670742 (-)
Type: peptidase
Location: 4666177 - 4670742 (-)
Gene ID: B15_contig_1_4319
Type: TC
Location: 4671226 - 4672908 (-)
Type: TC
Location: 4671226 - 4672908 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B15_contig_1_4310 | omnivore > vegetarian | 2.42376 | 0.04407 |
| B15_contig_1_4312 | omnivore > vegetarian | 2.31206 | 0.04520 |