Cluster: B15.CMAG_2_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: B15.CMAG_2
- CGC Family ID: CGCFAM_00473
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_290 | 300028 | 301023 | + | 9.B.97.1.1 |
| TC | B15_contig_1 | B15_contig_1_291 | 301065 | 301502 | - | 9.B.44.1.1 |
| TC | B15_contig_1 | B15_contig_1_292 | 301548 | 301889 | - | 9.B.44.1.1 |
| pfam | B15_contig_1 | B15_contig_1_293 | 302058 | 303512 | - | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | B15_contig_1 | B15_contig_1_294 | 303584 | 304906 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B15_contig_1 | B15_contig_1_295 | 305272 | 306264 | + | 3.A.1.2.4 |
| TC | B15_contig_1 | B15_contig_1_296 | 306342 | 307883 | + | 3.A.1.2.4 |
| TC | B15_contig_1 | B15_contig_1_297 | 307861 | 309042 | + | 3.A.1.2.4 |
| TF | B15_contig_1 | B15_contig_1_298 | 309120 | 310298 | + | HTH_AraC | HTH_AraC |
| CAZyme | B15_contig_1 | B15_contig_1_299 | 310406 | 311230 | - | GH73 |
| CAZyme | B15_contig_1 | B15_contig_1_300 | 311550 | 313580 | + | GH13_19 |
| STP | B15_contig_1 | B15_contig_1_301 | 313758 | 315011 | + | Aminotran_1_2 |
| pfam | B15_contig_1 | B15_contig_1_302 | 315236 | 316216 | + | DEDD_Tnp_IS110 | Transposase_20 |
| TC | B15_contig_1 | B15_contig_1_303 | 316442 | 316915 | - | 3.D.1.9.2 |
Gene ID: B15_contig_1_290
Type: TC
Location: 300028 - 301023 (+)
Type: TC
Location: 300028 - 301023 (+)
Gene ID: B15_contig_1_291
Type: TC
Location: 301065 - 301502 (-)
Type: TC
Location: 301065 - 301502 (-)
Gene ID: B15_contig_1_292
Type: TC
Location: 301548 - 301889 (-)
Type: TC
Location: 301548 - 301889 (-)
Gene ID: B15_contig_1_293
Type: pfam
Location: 302058 - 303512 (-)
Type: pfam
Location: 302058 - 303512 (-)
Gene ID: B15_contig_1_294
Type:
Location: 303584 - 304906 (-)
Type:
Location: 303584 - 304906 (-)
Gene ID: B15_contig_1_295
Type: TC
Location: 305272 - 306264 (+)
Type: TC
Location: 305272 - 306264 (+)
Gene ID: B15_contig_1_296
Type: TC
Location: 306342 - 307883 (+)
Type: TC
Location: 306342 - 307883 (+)
Gene ID: B15_contig_1_297
Type: TC
Location: 307861 - 309042 (+)
Type: TC
Location: 307861 - 309042 (+)
Gene ID: B15_contig_1_298
Type: TF
Location: 309120 - 310298 (+)
Type: TF
Location: 309120 - 310298 (+)
Gene ID: B15_contig_1_299
Type: CAZyme
Location: 310406 - 311230 (-)
Type: CAZyme
Location: 310406 - 311230 (-)
Gene ID: B15_contig_1_300
Type: CAZyme
Location: 311550 - 313580 (+)
Type: CAZyme
Location: 311550 - 313580 (+)
Gene ID: B15_contig_1_301
Type: STP
Location: 313758 - 315011 (+)
Type: STP
Location: 313758 - 315011 (+)
Gene ID: B15_contig_1_302
Type: pfam
Location: 315236 - 316216 (+)
Type: pfam
Location: 315236 - 316216 (+)
Gene ID: B15_contig_1_303
Type: TC
Location: 316442 - 316915 (-)
Type: TC
Location: 316442 - 316915 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.