Cluster: B15.CMAG_2_CGC38
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: B15.CMAG_2
- CGC Family ID: CGCFAM_01194
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_2503 | 2705004 | 2706740 | - | 2.A.36.6.11 |
| peptidase | B15_contig_1 | B15_contig_1_2504 | 2706835 | 2707749 | - | S66.002 |
| CAZyme | B15_contig_1 | B15_contig_1_2505 | 2707849 | 2708460 | + | GH23 |
| pfam | B15_contig_1 | B15_contig_1_2506 | 2708462 | 2709196 | - | PilZ | PilZN |
| TC | B15_contig_1 | B15_contig_1_2507 | 2709397 | 2709651 | + | 1.E.43.1.1 |
| TC | B15_contig_1 | B15_contig_1_2508 | 2709701 | 2711671 | - | 1.B.14.4.3 |
| pfam | B15_contig_1 | B15_contig_1_2509 | 2711697 | 2712551 | - | QRPTase_C | QRPTase_N |
| pfam | B15_contig_1 | B15_contig_1_2510 | 2712548 | 2713360 | - | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 |
| TC | B15_contig_1 | B15_contig_1_2511 | 2713370 | 2714128 | - | 3.A.1.14.8 |
| TC | B15_contig_1 | B15_contig_1_2512 | 2714125 | 2715105 | - | 3.A.1.14.11 |
| STP | B15_contig_1 | B15_contig_1_2513 | 2715105 | 2716127 | - | Peripla_BP_2 |
| CAZyme | B15_contig_1 | B15_contig_1_2514 | 2716457 | 2718154 | - | GH37 |
| TC | B15_contig_1 | B15_contig_1_2515 | 2718474 | 2719892 | - | 4.A.2.1.17 |
Gene ID: B15_contig_1_2503
Type: TC
Location: 2705004 - 2706740 (-)
Type: TC
Location: 2705004 - 2706740 (-)
Gene ID: B15_contig_1_2504
Type: peptidase
Location: 2706835 - 2707749 (-)
Type: peptidase
Location: 2706835 - 2707749 (-)
Gene ID: B15_contig_1_2505
Type: CAZyme
Location: 2707849 - 2708460 (+)
Type: CAZyme
Location: 2707849 - 2708460 (+)
Gene ID: B15_contig_1_2506
Type: pfam
Location: 2708462 - 2709196 (-)
Type: pfam
Location: 2708462 - 2709196 (-)
Gene ID: B15_contig_1_2507
Type: TC
Location: 2709397 - 2709651 (+)
Type: TC
Location: 2709397 - 2709651 (+)
Gene ID: B15_contig_1_2508
Type: TC
Location: 2709701 - 2711671 (-)
Type: TC
Location: 2709701 - 2711671 (-)
Gene ID: B15_contig_1_2509
Type: pfam
Location: 2711697 - 2712551 (-)
Type: pfam
Location: 2711697 - 2712551 (-)
Gene ID: B15_contig_1_2510
Type: pfam
Location: 2712548 - 2713360 (-)
Type: pfam
Location: 2712548 - 2713360 (-)
Gene ID: B15_contig_1_2511
Type: TC
Location: 2713370 - 2714128 (-)
Type: TC
Location: 2713370 - 2714128 (-)
Gene ID: B15_contig_1_2512
Type: TC
Location: 2714125 - 2715105 (-)
Type: TC
Location: 2714125 - 2715105 (-)
Gene ID: B15_contig_1_2513
Type: STP
Location: 2715105 - 2716127 (-)
Type: STP
Location: 2715105 - 2716127 (-)
Gene ID: B15_contig_1_2514
Type: CAZyme
Location: 2716457 - 2718154 (-)
Type: CAZyme
Location: 2716457 - 2718154 (-)
Gene ID: B15_contig_1_2515
Type: TC
Location: 2718474 - 2719892 (-)
Type: TC
Location: 2718474 - 2719892 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B15_contig_1_2511 | omnivore > vegetarian | 2.88761 | 0.04520 |