Cluster: B15.CMAG_2_CGC34
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: B15.CMAG_2
- CGC Family ID: CGCFAM_00695
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_2215 | 2414104 | 2417421 | - | 9.B.34.1.1 |
| pfam | B15_contig_1 | B15_contig_1_2216 | 2417739 | 2418380 | + | PRK |
| pfam | B15_contig_1 | B15_contig_1_2217 | 2418472 | 2419053 | + | DCD_N | DCD |
| TC | B15_contig_1 | B15_contig_1_2218 | 2419075 | 2420928 | + | 9.B.22.2.1 |
| TF | B15_contig_1 | B15_contig_1_2219 | 2420980 | 2421270 | - | HTH_3 |
| pfam | B15_contig_1 | B15_contig_1_2220 | 2421260 | 2421598 | - | Gp49 |
| TC | B15_contig_1 | B15_contig_1_2221 | 2421673 | 2423256 | - | 2.A.109.2.3 |
| TC | B15_contig_1 | B15_contig_1_2222 | 2423914 | 2425053 | + | 1.B.18.3.1 |
| pfam | B15_contig_1 | B15_contig_1_2223 | 2425059 | 2425502 | + | LMWPc |
| TC | B15_contig_1 | B15_contig_1_2224 | 2425505 | 2427667 | + | 8.A.3.3.2 |
| CAZyme | B15_contig_1 | B15_contig_1_2225 | 2427760 | 2428599 | + | GT2 |
| pfam | B15_contig_1 | B15_contig_1_2226 | 2428602 | 2429090 | + | Hexapep |
| CAZyme | B15_contig_1 | B15_contig_1_2227 | 2429087 | 2430304 | + | GT4 |
| NULL(UNKNOWN) | B15_contig_1 | B15_contig_1_2228 | 2430279 | 2431496 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B15_contig_1 | B15_contig_1_2229 | 2431507 | 2432253 | + | GT2 |
Gene ID: B15_contig_1_2215
Type: TC
Location: 2414104 - 2417421 (-)
Type: TC
Location: 2414104 - 2417421 (-)
Gene ID: B15_contig_1_2216
Type: pfam
Location: 2417739 - 2418380 (+)
Type: pfam
Location: 2417739 - 2418380 (+)
Gene ID: B15_contig_1_2217
Type: pfam
Location: 2418472 - 2419053 (+)
Type: pfam
Location: 2418472 - 2419053 (+)
Gene ID: B15_contig_1_2218
Type: TC
Location: 2419075 - 2420928 (+)
Type: TC
Location: 2419075 - 2420928 (+)
Gene ID: B15_contig_1_2219
Type: TF
Location: 2420980 - 2421270 (-)
Type: TF
Location: 2420980 - 2421270 (-)
Gene ID: B15_contig_1_2220
Type: pfam
Location: 2421260 - 2421598 (-)
Type: pfam
Location: 2421260 - 2421598 (-)
Gene ID: B15_contig_1_2221
Type: TC
Location: 2421673 - 2423256 (-)
Type: TC
Location: 2421673 - 2423256 (-)
Gene ID: B15_contig_1_2222
Type: TC
Location: 2423914 - 2425053 (+)
Type: TC
Location: 2423914 - 2425053 (+)
Gene ID: B15_contig_1_2223
Type: pfam
Location: 2425059 - 2425502 (+)
Type: pfam
Location: 2425059 - 2425502 (+)
Gene ID: B15_contig_1_2224
Type: TC
Location: 2425505 - 2427667 (+)
Type: TC
Location: 2425505 - 2427667 (+)
Gene ID: B15_contig_1_2225
Type: CAZyme
Location: 2427760 - 2428599 (+)
Type: CAZyme
Location: 2427760 - 2428599 (+)
Gene ID: B15_contig_1_2226
Type: pfam
Location: 2428602 - 2429090 (+)
Type: pfam
Location: 2428602 - 2429090 (+)
Gene ID: B15_contig_1_2227
Type: CAZyme
Location: 2429087 - 2430304 (+)
Type: CAZyme
Location: 2429087 - 2430304 (+)
Gene ID: B15_contig_1_2228
Type:
Location: 2430279 - 2431496 (+)
Type:
Location: 2430279 - 2431496 (+)
Gene ID: B15_contig_1_2229
Type: CAZyme
Location: 2431507 - 2432253 (+)
Type: CAZyme
Location: 2431507 - 2432253 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B15_contig_1_2218 | omnivore > vegetarian | 1.33428 | 0.04520 |