Cluster: B15.CMAG_2_CGC25
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: B15.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B15_contig_1 | B15_contig_1_1532 | 1699061 | 1700272 | + | 2.A.1.15.2 |
| pfam | B15_contig_1 | B15_contig_1_1533 | 1700374 | 1700913 | + | DUF2058 |
| CAZyme | B15_contig_1 | B15_contig_1_1534 | 1701038 | 1701871 | - | CE1 |
| pfam | B15_contig_1 | B15_contig_1_1535 | 1701963 | 1703072 | - | ADH_zinc_N | ADH_N |
| pfam | B15_contig_1 | B15_contig_1_1536 | 1703107 | 1703382 | - | Trns_repr_metal |
| TC | B15_contig_1 | B15_contig_1_1537 | 1703567 | 1704340 | - | 9.B.52.1.1 |
| CAZyme | B15_contig_1 | B15_contig_1_1538 | 1704901 | 1706097 | - | GT2 |
| CAZyme | B15_contig_1 | B15_contig_1_1539 | 1706107 | 1706778 | - | CE14 |
| TC | B15_contig_1 | B15_contig_1_1540 | 1707387 | 1708349 | + | 3.A.1.17.1 |
| TC | B15_contig_1 | B15_contig_1_1541 | 1708362 | 1709129 | + | 3.A.1.17.1 |
| TC | B15_contig_1 | B15_contig_1_1542 | 1709126 | 1709953 | + | 3.A.1.17.1 |
Gene ID: B15_contig_1_1532
Type: TC
Location: 1699061 - 1700272 (+)
Type: TC
Location: 1699061 - 1700272 (+)
Gene ID: B15_contig_1_1533
Type: pfam
Location: 1700374 - 1700913 (+)
Type: pfam
Location: 1700374 - 1700913 (+)
Gene ID: B15_contig_1_1534
Type: CAZyme
Location: 1701038 - 1701871 (-)
Type: CAZyme
Location: 1701038 - 1701871 (-)
Gene ID: B15_contig_1_1535
Type: pfam
Location: 1701963 - 1703072 (-)
Type: pfam
Location: 1701963 - 1703072 (-)
Gene ID: B15_contig_1_1536
Type: pfam
Location: 1703107 - 1703382 (-)
Type: pfam
Location: 1703107 - 1703382 (-)
Gene ID: B15_contig_1_1537
Type: TC
Location: 1703567 - 1704340 (-)
Type: TC
Location: 1703567 - 1704340 (-)
Gene ID: B15_contig_1_1538
Type: CAZyme
Location: 1704901 - 1706097 (-)
Type: CAZyme
Location: 1704901 - 1706097 (-)
Gene ID: B15_contig_1_1539
Type: CAZyme
Location: 1706107 - 1706778 (-)
Type: CAZyme
Location: 1706107 - 1706778 (-)
Gene ID: B15_contig_1_1540
Type: TC
Location: 1707387 - 1708349 (+)
Type: TC
Location: 1707387 - 1708349 (+)
Gene ID: B15_contig_1_1541
Type: TC
Location: 1708362 - 1709129 (+)
Type: TC
Location: 1708362 - 1709129 (+)
Gene ID: B15_contig_1_1542
Type: TC
Location: 1709126 - 1709953 (+)
Type: TC
Location: 1709126 - 1709953 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia coli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B15_contig_1_1537 | omnivore > vegetarian | 1.54701 | 0.04520 |
| B15_contig_1_1538 | omnivore > vegetarian | 2.75216 | 0.04407 |