Cluster: B137.CMAG_3_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: B137.CMAG_3
- CGC Family ID: CGCFAM_01691
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B137_contig_801 | B137_contig_801_958 | 1246434 | 1248191 | + | 3.A.1.135.9 |
| TC | B137_contig_801 | B137_contig_801_959 | 1248197 | 1250065 | + | 3.A.1.135.9 |
| NULL(UNKNOWN) | B137_contig_801 | B137_contig_801_960 | 1250108 | 1250557 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B137_contig_801 | B137_contig_801_961 | 1250644 | 1251465 | - | 3.A.1.31.1 |
| NULL(UNKNOWN) | B137_contig_801 | B137_contig_801_962 | 1251462 | 1251995 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | B137_contig_801 | B137_contig_801_963 | 1252142 | 1253695 | + | C69.001 |
| CAZyme | B137_contig_801 | B137_contig_801_964 | 1253853 | 1255757 | - | GH129 |
| CAZyme | B137_contig_801 | B137_contig_801_965 | 1255821 | 1256855 | - | GT2 |
| STP | B137_contig_801 | B137_contig_801_966 | 1257023 | 1257787 | - | TetR_N |
| NULL(UNKNOWN) | B137_contig_801 | B137_contig_801_967 | 1257891 | 1258187 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B137_contig_801 | B137_contig_801_968 | 1258263 | 1259504 | + | 3.A.5.2.2 |
| TC | B137_contig_801 | B137_contig_801_969 | 1259799 | 1261097 | + | 1.A.11.1.3 |
| pfam | B137_contig_801 | B137_contig_801_970 | 1261099 | 1261437 | + | P-II |
| STP | B137_contig_801 | B137_contig_801_971 | 1261717 | 1263588 | + | HD | NTP_transf_2 |
| TC | B137_contig_801 | B137_contig_801_972 | 1263934 | 1265340 | - | 2.A.66.1.32 |
Gene ID: B137_contig_801_958
Type: TC
Location: 1246434 - 1248191 (+)
Type: TC
Location: 1246434 - 1248191 (+)
Gene ID: B137_contig_801_959
Type: TC
Location: 1248197 - 1250065 (+)
Type: TC
Location: 1248197 - 1250065 (+)
Gene ID: B137_contig_801_960
Type:
Location: 1250108 - 1250557 (-)
Type:
Location: 1250108 - 1250557 (-)
Gene ID: B137_contig_801_961
Type: TC
Location: 1250644 - 1251465 (-)
Type: TC
Location: 1250644 - 1251465 (-)
Gene ID: B137_contig_801_962
Type:
Location: 1251462 - 1251995 (-)
Type:
Location: 1251462 - 1251995 (-)
Gene ID: B137_contig_801_963
Type: peptidase
Location: 1252142 - 1253695 (+)
Type: peptidase
Location: 1252142 - 1253695 (+)
Gene ID: B137_contig_801_964
Type: CAZyme
Location: 1253853 - 1255757 (-)
Type: CAZyme
Location: 1253853 - 1255757 (-)
Gene ID: B137_contig_801_965
Type: CAZyme
Location: 1255821 - 1256855 (-)
Type: CAZyme
Location: 1255821 - 1256855 (-)
Gene ID: B137_contig_801_966
Type: STP
Location: 1257023 - 1257787 (-)
Type: STP
Location: 1257023 - 1257787 (-)
Gene ID: B137_contig_801_967
Type:
Location: 1257891 - 1258187 (+)
Type:
Location: 1257891 - 1258187 (+)
Gene ID: B137_contig_801_968
Type: TC
Location: 1258263 - 1259504 (+)
Type: TC
Location: 1258263 - 1259504 (+)
Gene ID: B137_contig_801_969
Type: TC
Location: 1259799 - 1261097 (+)
Type: TC
Location: 1259799 - 1261097 (+)
Gene ID: B137_contig_801_970
Type: pfam
Location: 1261099 - 1261437 (+)
Type: pfam
Location: 1261099 - 1261437 (+)
Gene ID: B137_contig_801_971
Type: STP
Location: 1261717 - 1263588 (+)
Type: STP
Location: 1261717 - 1263588 (+)
Gene ID: B137_contig_801_972
Type: TC
Location: 1263934 - 1265340 (-)
Type: TC
Location: 1263934 - 1265340 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium bifidum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.