Cluster: B125.bin_9_CGC41
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate:
- Genome ID: B125.bin_9
- CGC Family ID: CGCFAM_07418
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B125_contig_40 | B125_contig_40_52 | 69677 | 71497 | + | GH2 |
| TC | B125_contig_40 | B125_contig_40_53 | 71587 | 72528 | + | 3.A.1.1.10 |
| TC | B125_contig_40 | B125_contig_40_54 | 72528 | 73421 | + | 3.A.1.1.10 |
| CAZyme | B125_contig_40 | B125_contig_40_55 | 73487 | 75532 | + | GH42 |
| STP | B125_contig_40 | B125_contig_40_56 | 75680 | 77257 | + | SBP_bac_1 |
| CAZyme | B125_contig_40 | B125_contig_40_57 | 77494 | 79014 | + | GH43_35 |
| TC | B125_contig_40 | B125_contig_40_58 | 79041 | 80855 | + | 8.A.59.2.1 |
| TF | B125_contig_40 | B125_contig_40_59 | 80872 | 82485 | + | HTH_AraC | HTH_AraC |
| CAZyme | B125_contig_40 | B125_contig_40_60 | 82475 | 85186 | + | GH106 |
| CAZyme | B125_contig_40 | B125_contig_40_61 | 85183 | 86520 | + | GH1 |
| CAZyme | B125_contig_40 | B125_contig_40_62 | 86573 | 87769 | + | GH106 |
| NULL(UNKNOWN) | B125_contig_40 | B125_contig_40_63 | 87809 | 89509 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | B125_contig_40 | B125_contig_40_64 | 89704 | 90735 | - | LacI |
| CAZyme | B125_contig_40 | B125_contig_40_65 | 91042 | 93129 | + | GH3 |
| TC | B125_contig_40 | B125_contig_40_66 | 93290 | 94654 | + | 2.A.2.3.3 |
| TF | B125_contig_40 | B125_contig_40_67 | 94747 | 95832 | - | AraC_N | HTH_AraC |
| CAZyme | B125_contig_40 | B125_contig_40_68 | 96006 | 98477 | + | GH2 |
| CAZyme | B125_contig_40 | B125_contig_40_69 | 98507 | 100990 | + | GH2 |
Gene ID: B125_contig_40_52
Type: CAZyme
Location: 69677 - 71497 (+)
Type: CAZyme
Location: 69677 - 71497 (+)
Gene ID: B125_contig_40_53
Type: TC
Location: 71587 - 72528 (+)
Type: TC
Location: 71587 - 72528 (+)
Gene ID: B125_contig_40_54
Type: TC
Location: 72528 - 73421 (+)
Type: TC
Location: 72528 - 73421 (+)
Gene ID: B125_contig_40_55
Type: CAZyme
Location: 73487 - 75532 (+)
Type: CAZyme
Location: 73487 - 75532 (+)
Gene ID: B125_contig_40_56
Type: STP
Location: 75680 - 77257 (+)
Type: STP
Location: 75680 - 77257 (+)
Gene ID: B125_contig_40_57
Type: CAZyme
Location: 77494 - 79014 (+)
Type: CAZyme
Location: 77494 - 79014 (+)
Gene ID: B125_contig_40_58
Type: TC
Location: 79041 - 80855 (+)
Type: TC
Location: 79041 - 80855 (+)
Gene ID: B125_contig_40_59
Type: TF
Location: 80872 - 82485 (+)
Type: TF
Location: 80872 - 82485 (+)
Gene ID: B125_contig_40_60
Type: CAZyme
Location: 82475 - 85186 (+)
Type: CAZyme
Location: 82475 - 85186 (+)
Gene ID: B125_contig_40_61
Type: CAZyme
Location: 85183 - 86520 (+)
Type: CAZyme
Location: 85183 - 86520 (+)
Gene ID: B125_contig_40_62
Type: CAZyme
Location: 86573 - 87769 (+)
Type: CAZyme
Location: 86573 - 87769 (+)
Gene ID: B125_contig_40_63
Type:
Location: 87809 - 89509 (+)
Type:
Location: 87809 - 89509 (+)
Gene ID: B125_contig_40_64
Type: TF
Location: 89704 - 90735 (-)
Type: TF
Location: 89704 - 90735 (-)
Gene ID: B125_contig_40_65
Type: CAZyme
Location: 91042 - 93129 (+)
Type: CAZyme
Location: 91042 - 93129 (+)
Gene ID: B125_contig_40_66
Type: TC
Location: 93290 - 94654 (+)
Type: TC
Location: 93290 - 94654 (+)
Gene ID: B125_contig_40_67
Type: TF
Location: 94747 - 95832 (-)
Type: TF
Location: 94747 - 95832 (-)
Gene ID: B125_contig_40_68
Type: CAZyme
Location: 96006 - 98477 (+)
Type: CAZyme
Location: 96006 - 98477 (+)
Gene ID: B125_contig_40_69
Type: CAZyme
Location: 98507 - 100990 (+)
Type: CAZyme
Location: 98507 - 100990 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.