Cluster: B125.bin_9_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: B125.bin_9
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B125_contig_1852 | B125_contig_1852_224 | 233053 | 233412 | - | 9.B.55.2.1 |
| NULL(UNKNOWN) | B125_contig_1852 | B125_contig_1852_225 | 233415 | 233876 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B125_contig_1852 | B125_contig_1852_226 | 234285 | 236033 | + | SHIRT |
| CAZyme | B125_contig_1852 | B125_contig_1852_227 | 236236 | 238389 | + | GH3 |
| pfam | B125_contig_1852 | B125_contig_1852_228 | 238402 | 239931 | + | IMS | IMS_C |
| NULL(UNKNOWN) | B125_contig_1852 | B125_contig_1852_229 | 239962 | 240426 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B125_contig_1852 | B125_contig_1852_230 | 240602 | 241945 | + | 3.A.1.1.45 |
| TC | B125_contig_1852 | B125_contig_1852_231 | 242020 | 242862 | + | 3.A.1.1.45 |
| TC | B125_contig_1852 | B125_contig_1852_232 | 242862 | 243737 | + | 3.A.1.1.45 |
| TF | B125_contig_1852 | B125_contig_1852_233 | 243861 | 244877 | + | LacI |
| CAZyme | B125_contig_1852 | B125_contig_1852_234 | 244937 | 247234 | + | GH31_3 |
| TF | B125_contig_1852 | B125_contig_1852_235 | 247289 | 248035 | - | HTH_AraC | HTH_AraC |
| TC | B125_contig_1852 | B125_contig_1852_236 | 248240 | 249649 | + | 2.A.2.3.5 |
| CAZyme | B125_contig_1852 | B125_contig_1852_237 | 249646 | 250890 | + | CE15 |
Gene ID: B125_contig_1852_224
Type: TC
Location: 233053 - 233412 (-)
Type: TC
Location: 233053 - 233412 (-)
Gene ID: B125_contig_1852_225
Type:
Location: 233415 - 233876 (-)
Type:
Location: 233415 - 233876 (-)
Gene ID: B125_contig_1852_226
Type: pfam
Location: 234285 - 236033 (+)
Type: pfam
Location: 234285 - 236033 (+)
Gene ID: B125_contig_1852_227
Type: CAZyme
Location: 236236 - 238389 (+)
Type: CAZyme
Location: 236236 - 238389 (+)
Gene ID: B125_contig_1852_228
Type: pfam
Location: 238402 - 239931 (+)
Type: pfam
Location: 238402 - 239931 (+)
Gene ID: B125_contig_1852_229
Type:
Location: 239962 - 240426 (+)
Type:
Location: 239962 - 240426 (+)
Gene ID: B125_contig_1852_230
Type: TC
Location: 240602 - 241945 (+)
Type: TC
Location: 240602 - 241945 (+)
Gene ID: B125_contig_1852_231
Type: TC
Location: 242020 - 242862 (+)
Type: TC
Location: 242020 - 242862 (+)
Gene ID: B125_contig_1852_232
Type: TC
Location: 242862 - 243737 (+)
Type: TC
Location: 242862 - 243737 (+)
Gene ID: B125_contig_1852_233
Type: TF
Location: 243861 - 244877 (+)
Type: TF
Location: 243861 - 244877 (+)
Gene ID: B125_contig_1852_234
Type: CAZyme
Location: 244937 - 247234 (+)
Type: CAZyme
Location: 244937 - 247234 (+)
Gene ID: B125_contig_1852_235
Type: TF
Location: 247289 - 248035 (-)
Type: TF
Location: 247289 - 248035 (-)
Gene ID: B125_contig_1852_236
Type: TC
Location: 248240 - 249649 (+)
Type: TC
Location: 248240 - 249649 (+)
Gene ID: B125_contig_1852_237
Type: CAZyme
Location: 249646 - 250890 (+)
Type: CAZyme
Location: 249646 - 250890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.