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Cluster: AG508_10_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_127100 k141_127100_3 2520 4229 + 9.B.33.1.1
TF k141_127100 k141_127100_4 4233 5387 + HTH_AraC
TC k141_127100 k141_127100_5 5556 7214 + 3.A.1.1.10
TC k141_127100 k141_127100_6 7217 8164 + 3.A.1.1.9
TC k141_127100 k141_127100_7 8176 9075 + 3.A.1.1.9
pfam k141_127100 k141_127100_8 9080 10789 + Bmp
pfam k141_127100 k141_127100_9 10828 12366 + Big_2
CAZyme k141_127100 k141_127100_10 12430 13608 + GH37
CAZyme k141_127100 k141_127100_11 13589 15568 + GH3
CAZyme k141_127100 k141_127100_12 15577 17091 + GH31_19
Gene ID: k141_127100_3
Type: TC
Location: 2520 - 4229 (+)
Gene ID: k141_127100_4
Type: TF
Location: 4233 - 5387 (+)
Gene ID: k141_127100_5
Type: TC
Location: 5556 - 7214 (+)
Gene ID: k141_127100_6
Type: TC
Location: 7217 - 8164 (+)
Gene ID: k141_127100_7
Type: TC
Location: 8176 - 9075 (+)
Gene ID: k141_127100_8
Type: pfam
Location: 9080 - 10789 (+)
Gene ID: k141_127100_9
Type: pfam
Location: 10828 - 12366 (+)
Gene ID: k141_127100_10
Type: CAZyme
Location: 12430 - 13608 (+)
Gene ID: k141_127100_11
Type: CAZyme
Location: 13589 - 15568 (+)
Gene ID: k141_127100_12
Type: CAZyme
Location: 15577 - 17091 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_127100_3 vegetarian > omnivore 1.19694 0.00683
k141_127100_4 vegetarian > omnivore 1.66414 0.00683
k141_127100_4 vegetarian > vegan 1.00146 0.00494
k141_127100_5 vegetarian > omnivore 1.38064 0.00683
k141_127100_5 vegetarian > vegan 1.09540 0.00494
k141_127100_6 vegetarian > omnivore 1.22865 0.00683
k141_127100_6 vegetarian > vegan 1.06774 0.00494
k141_127100_7 vegetarian > omnivore 1.22629 0.00683
k141_127100_7 vegetarian > vegan 1.69038 0.00494
k141_127100_8 vegetarian > vegan 1.53238 0.00494
k141_127100_8 vegetarian > omnivore 1.60604 0.00683
k141_127100_9 vegetarian > omnivore 1.21489 0.00683
k141_127100_9 vegetarian > vegan 1.49480 0.00494
k141_127100_10 vegetarian > vegan 1.61182 0.00494
k141_127100_10 vegetarian > omnivore 1.27165 0.00683
k141_127100_11 vegetarian > vegan 1.76731 0.00494
k141_127100_11 vegetarian > omnivore 1.28663 0.00683
k141_127100_12 vegetarian > vegan 1.86524 0.00494
k141_127100_12 vegetarian > omnivore 1.39496 0.00683

🧭 Explore Read Mapping of CGC

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