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Cluster: AG473_9_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_116922 k141_116922_43 49944 57557 + 9.A.25.1.1
peptidase k141_116922 k141_116922_44 57881 59416 + S09.UPW
TF k141_116922 k141_116922_45 59779 61419 + HTH_AraC
CAZyme k141_116922 k141_116922_46 61599 64136 + GH31_4
STP k141_116922 k141_116922_47 64385 64879 + Sigma70_r2 | Sigma70_r4_2
STP k141_116922 k141_116922_48 64919 65929 + FecR
TC k141_116922 k141_116922_49 66142 69360 + 1.B.14.6.1
TC k141_116922 k141_116922_50 69384 71009 + 8.A.46.1.1
NULL(UNKNOWN) k141_116922 k141_116922_51 71113 71349 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_116922 k141_116922_52 71645 73234 - 3.D.10.1.4
pfam k141_116922 k141_116922_53 73386 73805 + bPH_4
peptidase k141_116922 k141_116922_54 73795 75111 + S13.UPW
TC k141_116922 k141_116922_55 75134 76387 + 1.A.23.4.5
Gene ID: k141_116922_43
Type: TC
Location: 49944 - 57557 (+)
Gene ID: k141_116922_44
Type: peptidase
Location: 57881 - 59416 (+)
Gene ID: k141_116922_45
Type: TF
Location: 59779 - 61419 (+)
Gene ID: k141_116922_46
Type: CAZyme
Location: 61599 - 64136 (+)
Gene ID: k141_116922_47
Type: STP
Location: 64385 - 64879 (+)
Gene ID: k141_116922_48
Type: STP
Location: 64919 - 65929 (+)
Gene ID: k141_116922_49
Type: TC
Location: 66142 - 69360 (+)
Gene ID: k141_116922_50
Type: TC
Location: 69384 - 71009 (+)
Gene ID: k141_116922_51
Type:
Location: 71113 - 71349 (-)
Gene ID: k141_116922_52
Type: TC
Location: 71645 - 73234 (-)
Gene ID: k141_116922_53
Type: pfam
Location: 73386 - 73805 (+)
Gene ID: k141_116922_54
Type: peptidase
Location: 73795 - 75111 (+)
Gene ID: k141_116922_55
Type: TC
Location: 75134 - 76387 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_116922_51 vegetarian > vegan 4.33561 0.00245

🧭 Explore Read Mapping of CGC

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