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Cluster: AG444_bin.3_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_149257 k141_149257_25 27266 28252 + 3.A.1.2.9
TC k141_149257 k141_149257_26 28398 29909 + 3.A.1.2.9
TC k141_149257 k141_149257_27 29906 30892 + 3.A.1.2.9
TC k141_149257 k141_149257_28 30910 31914 + 3.A.1.2.15
pfam k141_149257 k141_149257_29 32003 33151 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
pfam k141_149257 k141_149257_30 33148 33462 + rhaM
TC k141_149257 k141_149257_31 33500 34765 - 2.A.1.5.4
CAZyme k141_149257 k141_149257_32 34807 36930 - GH36
TF k141_149257 k141_149257_33 37046 38041 - LacI
TF k141_149257 k141_149257_34 38129 38677 - HTH_3
TC k141_149257 k141_149257_35 38747 39436 + 2.A.78.2.3
TC k141_149257 k141_149257_36 39436 39759 + 2.A.78.2.3
pfam k141_149257 k141_149257_37 39800 40012 - YdgH_BhsA-like
pfam k141_149257 k141_149257_38 40141 40977 - FdhD-NarQ
TC k141_149257 k141_149257_39 41134 41721 + 5.A.3.2.1
TC k141_149257 k141_149257_40 41770 44184 + 5.A.3.2.1
TC k141_149257 k141_149257_41 44197 45099 + 5.A.3.2.1
TC k141_149257 k141_149257_42 45096 45731 + 5.A.3.2.1
Gene ID: k141_149257_25
Type: TC
Location: 27266 - 28252 (+)
Gene ID: k141_149257_26
Type: TC
Location: 28398 - 29909 (+)
Gene ID: k141_149257_27
Type: TC
Location: 29906 - 30892 (+)
Gene ID: k141_149257_28
Type: TC
Location: 30910 - 31914 (+)
Gene ID: k141_149257_29
Type: pfam
Location: 32003 - 33151 (+)
Gene ID: k141_149257_30
Type: pfam
Location: 33148 - 33462 (+)
Gene ID: k141_149257_31
Type: TC
Location: 33500 - 34765 (-)
Gene ID: k141_149257_32
Type: CAZyme
Location: 34807 - 36930 (-)
Gene ID: k141_149257_33
Type: TF
Location: 37046 - 38041 (-)
Gene ID: k141_149257_34
Type: TF
Location: 38129 - 38677 (-)
Gene ID: k141_149257_35
Type: TC
Location: 38747 - 39436 (+)
Gene ID: k141_149257_36
Type: TC
Location: 39436 - 39759 (+)
Gene ID: k141_149257_37
Type: pfam
Location: 39800 - 40012 (-)
Gene ID: k141_149257_38
Type: pfam
Location: 40141 - 40977 (-)
Gene ID: k141_149257_39
Type: TC
Location: 41134 - 41721 (+)
Gene ID: k141_149257_40
Type: TC
Location: 41770 - 44184 (+)
Gene ID: k141_149257_41
Type: TC
Location: 44197 - 45099 (+)
Gene ID: k141_149257_42
Type: TC
Location: 45096 - 45731 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_149257_25 vegetarian > omnivore 1.48158 0.02921
k141_149257_27 vegetarian > omnivore 1.31513 0.02921
k141_149257_28 vegetarian > vegan 1.28546 0.02809
k141_149257_29 vegetarian > omnivore 1.29986 0.01033
k141_149257_30 vegetarian > omnivore 2.54608 0.02921
k141_149257_31 vegetarian > omnivore 1.78082 0.02921
k141_149257_32 vegetarian > omnivore 1.98988 0.02921
k141_149257_34 vegetarian > vegan 1.63606 0.02809
k141_149257_34 vegetarian > omnivore 1.38067 0.02921
k141_149257_35 vegetarian > vegan 1.11820 0.02809

🧭 Explore Read Mapping of CGC

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