Cluster: AG417_bin.22_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: AG417_bin.22
- CGC Family ID: CGCFAM_00024
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_220955 | k141_220955_5 | 3884 | 4678 | - | 3.A.1.34.1 |
| TC | k141_220955 | k141_220955_6 | 4671 | 5594 | - | 3.A.1.34.1 |
| TC | k141_220955 | k141_220955_7 | 5799 | 6779 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | k141_220955 | k141_220955_8 | 6939 | 7727 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_220955 | k141_220955_9 | 7980 | 9383 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | k141_220955 | k141_220955_10 | 9520 | 11454 | - | 9.B.97.5.1 |
| TC | k141_220955 | k141_220955_11 | 11690 | 12253 | - | 4.A.1.2.6 |
| peptidase | k141_220955 | k141_220955_12 | 12500 | 13399 | + | S09.UPW |
| NULL(UNKNOWN) | k141_220955 | k141_220955_13 | 13447 | 13767 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_220955 | k141_220955_14 | 13889 | 16249 | + | 9.A.8.1.6 |
| TC | k141_220955 | k141_220955_15 | 16371 | 17567 | + | 2.A.1.2.18 |
| CAZyme | k141_220955 | k141_220955_16 | 17721 | 19097 | + | GH13_20 |
Gene ID: k141_220955_5
Type: TC
Location: 3884 - 4678 (-)
Type: TC
Location: 3884 - 4678 (-)
Gene ID: k141_220955_6
Type: TC
Location: 4671 - 5594 (-)
Type: TC
Location: 4671 - 5594 (-)
Gene ID: k141_220955_7
Type: TC
Location: 5799 - 6779 (-)
Type: TC
Location: 5799 - 6779 (-)
Gene ID: k141_220955_8
Type:
Location: 6939 - 7727 (-)
Type:
Location: 6939 - 7727 (-)
Gene ID: k141_220955_9
Type: pfam
Location: 7980 - 9383 (-)
Type: pfam
Location: 7980 - 9383 (-)
Gene ID: k141_220955_10
Type: TC
Location: 9520 - 11454 (-)
Type: TC
Location: 9520 - 11454 (-)
Gene ID: k141_220955_11
Type: TC
Location: 11690 - 12253 (-)
Type: TC
Location: 11690 - 12253 (-)
Gene ID: k141_220955_12
Type: peptidase
Location: 12500 - 13399 (+)
Type: peptidase
Location: 12500 - 13399 (+)
Gene ID: k141_220955_13
Type:
Location: 13447 - 13767 (+)
Type:
Location: 13447 - 13767 (+)
Gene ID: k141_220955_14
Type: TC
Location: 13889 - 16249 (+)
Type: TC
Location: 13889 - 16249 (+)
Gene ID: k141_220955_15
Type: TC
Location: 16371 - 17567 (+)
Type: TC
Location: 16371 - 17567 (+)
Gene ID: k141_220955_16
Type: CAZyme
Location: 17721 - 19097 (+)
Type: CAZyme
Location: 17721 - 19097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_220955_10 | vegan > omnivore | 1.32061 | 0.00863 |
| k141_220955_10 | vegetarian > omnivore | 1.44956 | 0.03761 |