Cluster: AG396_75_CGC17
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: AG396_75
- CGC Family ID: CGCFAM_01608
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_104472 | k141_104472_4 | 4906 | 8325 | + | CBM13 | CBM13 |
| pfam | k141_104472 | k141_104472_5 | 8693 | 10429 | - | CW_binding_2 | CW_binding_2 | CW_binding_2 |
| TC | k141_104472 | k141_104472_6 | 10678 | 11466 | - | 3.A.1.103.1 |
| TC | k141_104472 | k141_104472_7 | 11476 | 12321 | - | 3.A.1.103.6 |
| CAZyme | k141_104472 | k141_104472_8 | 12475 | 15486 | - | GT111 | GT2 | GT8 |
| CAZyme | k141_104472 | k141_104472_9 | 15583 | 16512 | - | GT2 |
| pfam | k141_104472 | k141_104472_10 | 16529 | 18235 | - | DUF6020 |
| TC | k141_104472 | k141_104472_11 | 18418 | 19449 | - | 9.B.97.1.2 |
| CAZyme | k141_104472 | k141_104472_12 | 19474 | 24447 | - | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| CAZyme | k141_104472 | k141_104472_13 | 24469 | 26919 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_104472 | k141_104472_14 | 26950 | 30474 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_104472 | k141_104472_15 | 30546 | 34109 | - | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_104472 | k141_104472_16 | 34317 | 37715 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| pfam | k141_104472 | k141_104472_17 | 37816 | 38769 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_104472 | k141_104472_18 | 38786 | 40009 | - | GT4 |
| CAZyme | k141_104472 | k141_104472_19 | 40041 | 41171 | - | GT2 |
Gene ID: k141_104472_4
Type: CAZyme
Location: 4906 - 8325 (+)
Type: CAZyme
Location: 4906 - 8325 (+)
Gene ID: k141_104472_5
Type: pfam
Location: 8693 - 10429 (-)
Type: pfam
Location: 8693 - 10429 (-)
Gene ID: k141_104472_6
Type: TC
Location: 10678 - 11466 (-)
Type: TC
Location: 10678 - 11466 (-)
Gene ID: k141_104472_7
Type: TC
Location: 11476 - 12321 (-)
Type: TC
Location: 11476 - 12321 (-)
Gene ID: k141_104472_8
Type: CAZyme
Location: 12475 - 15486 (-)
Type: CAZyme
Location: 12475 - 15486 (-)
Gene ID: k141_104472_9
Type: CAZyme
Location: 15583 - 16512 (-)
Type: CAZyme
Location: 15583 - 16512 (-)
Gene ID: k141_104472_10
Type: pfam
Location: 16529 - 18235 (-)
Type: pfam
Location: 16529 - 18235 (-)
Gene ID: k141_104472_11
Type: TC
Location: 18418 - 19449 (-)
Type: TC
Location: 18418 - 19449 (-)
Gene ID: k141_104472_12
Type: CAZyme
Location: 19474 - 24447 (-)
Type: CAZyme
Location: 19474 - 24447 (-)
Gene ID: k141_104472_13
Type: CAZyme
Location: 24469 - 26919 (-)
Type: CAZyme
Location: 24469 - 26919 (-)
Gene ID: k141_104472_14
Type: CAZyme
Location: 26950 - 30474 (-)
Type: CAZyme
Location: 26950 - 30474 (-)
Gene ID: k141_104472_15
Type: CAZyme
Location: 30546 - 34109 (-)
Type: CAZyme
Location: 30546 - 34109 (-)
Gene ID: k141_104472_16
Type: CAZyme
Location: 34317 - 37715 (-)
Type: CAZyme
Location: 34317 - 37715 (-)
Gene ID: k141_104472_17
Type: pfam
Location: 37816 - 38769 (-)
Type: pfam
Location: 37816 - 38769 (-)
Gene ID: k141_104472_18
Type: CAZyme
Location: 38786 - 40009 (-)
Type: CAZyme
Location: 38786 - 40009 (-)
Gene ID: k141_104472_19
Type: CAZyme
Location: 40041 - 41171 (-)
Type: CAZyme
Location: 40041 - 41171 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.