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Cluster: AG390_93_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_20384 k141_20384_3 2038 3054 + 3.A.1.10.1
TC k141_20384 k141_20384_4 3079 4653 + 3.A.1.10.1
TC k141_20384 k141_20384_5 4655 5686 + 3.A.1.10.5
pfam k141_20384 k141_20384_6 5837 6112 + YdgH_BhsA-like
TC k141_20384 k141_20384_7 6336 8519 + 1.B.14.1.15
pfam k141_20384 k141_20384_8 8646 10619 + PhoX
TC k141_20384 k141_20384_9 10722 12107 + 2.A.3.1.1
TF k141_20384 k141_20384_10 12260 12559 - HTH_3
pfam k141_20384 k141_20384_11 12547 12909 - Gp49
TC k141_20384 k141_20384_12 13114 14352 + 2.A.1.10.4
pfam k141_20384 k141_20384_13 14368 15393 + AP_endonuc_2
CAZyme k141_20384 k141_20384_14 15386 16528 + GH109
TF k141_20384 k141_20384_15 16604 17575 + LacI
TC k141_20384 k141_20384_16 17576 18820 - 1.A.23.4.5
TC k141_20384 k141_20384_17 18885 20321 - 2.A.1.3.38
pfam k141_20384 k141_20384_18 20429 21298 + HTH_31 | MLTR_LBD
TC k141_20384 k141_20384_19 21295 22338 + 9.B.8.3.4
Gene ID: k141_20384_3
Type: TC
Location: 2038 - 3054 (+)
Gene ID: k141_20384_4
Type: TC
Location: 3079 - 4653 (+)
Gene ID: k141_20384_5
Type: TC
Location: 4655 - 5686 (+)
Gene ID: k141_20384_6
Type: pfam
Location: 5837 - 6112 (+)
Gene ID: k141_20384_7
Type: TC
Location: 6336 - 8519 (+)
Gene ID: k141_20384_8
Type: pfam
Location: 8646 - 10619 (+)
Gene ID: k141_20384_9
Type: TC
Location: 10722 - 12107 (+)
Gene ID: k141_20384_10
Type: TF
Location: 12260 - 12559 (-)
Gene ID: k141_20384_11
Type: pfam
Location: 12547 - 12909 (-)
Gene ID: k141_20384_12
Type: TC
Location: 13114 - 14352 (+)
Gene ID: k141_20384_13
Type: pfam
Location: 14368 - 15393 (+)
Gene ID: k141_20384_14
Type: CAZyme
Location: 15386 - 16528 (+)
Gene ID: k141_20384_15
Type: TF
Location: 16604 - 17575 (+)
Gene ID: k141_20384_16
Type: TC
Location: 17576 - 18820 (-)
Gene ID: k141_20384_17
Type: TC
Location: 18885 - 20321 (-)
Gene ID: k141_20384_18
Type: pfam
Location: 20429 - 21298 (+)
Gene ID: k141_20384_19
Type: TC
Location: 21295 - 22338 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_20384_6 vegetarian > omnivore 2.78105 0.03862
k141_20384_7 vegetarian > omnivore 2.22531 0.02062
k141_20384_8 vegetarian > omnivore 1.70222 0.03862
k141_20384_8 vegetarian > vegan 1.52788 0.02247
k141_20384_12 vegetarian > vegan 1.09383 0.02247
k141_20384_14 vegetarian > omnivore 1.15141 0.03862
k141_20384_14 vegetarian > vegan 1.31842 0.02247
k141_20384_15 vegetarian > omnivore 1.29428 0.03862
k141_20384_16 vegetarian > omnivore 1.12341 0.02673
k141_20384_17 vegetarian > omnivore 2.76123 0.03862
k141_20384_18 vegetarian > omnivore 1.22805 0.03862

🧭 Explore Read Mapping of CGC

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