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Cluster: AG390_93_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_79211 k141_79211_40 41372 43783 + 1.B.11.5.1
NULL(UNKNOWN) k141_79211 k141_79211_41 43791 44381 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_79211 k141_79211_42 44421 44744 - 2.A.78.2.3
TC k141_79211 k141_79211_43 44744 45403 - 2.A.78.2.3
TF k141_79211 k141_79211_44 45505 46053 + HTH_3
TF k141_79211 k141_79211_45 46071 47066 + LacI
CAZyme k141_79211 k141_79211_46 47171 49294 + GH36
TC k141_79211 k141_79211_47 49339 50616 + 2.A.1.5.4
Gene ID: k141_79211_40
Type: TC
Location: 41372 - 43783 (+)
Gene ID: k141_79211_41
Type:
Location: 43791 - 44381 (+)
Gene ID: k141_79211_42
Type: TC
Location: 44421 - 44744 (-)
Gene ID: k141_79211_43
Type: TC
Location: 44744 - 45403 (-)
Gene ID: k141_79211_44
Type: TF
Location: 45505 - 46053 (+)
Gene ID: k141_79211_45
Type: TF
Location: 46071 - 47066 (+)
Gene ID: k141_79211_46
Type: CAZyme
Location: 47171 - 49294 (+)
Gene ID: k141_79211_47
Type: TC
Location: 49339 - 50616 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_79211_42 vegetarian > omnivore 1.73299 0.03862
k141_79211_47 vegetarian > omnivore 2.00435 0.03862
k141_79211_47 vegetarian > vegan 1.24160 0.02247

🧭 Explore Read Mapping of CGC

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