Cluster: AG350_bin.74_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: AG350_bin.74
- CGC Family ID: CGCFAM_01608
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_92228 | k141_92228_28 | 45833 | 49252 | + | CBM13 | CBM13 |
| pfam | k141_92228 | k141_92228_29 | 49620 | 51356 | - | CW_binding_2 | CW_binding_2 | CW_binding_2 |
| TC | k141_92228 | k141_92228_30 | 51605 | 52393 | - | 3.A.1.103.1 |
| TC | k141_92228 | k141_92228_31 | 52403 | 53248 | - | 3.A.1.103.6 |
| CAZyme | k141_92228 | k141_92228_32 | 53402 | 56413 | - | GT111 | GT2 | GT8 |
| CAZyme | k141_92228 | k141_92228_33 | 56510 | 57439 | - | GT2 |
| pfam | k141_92228 | k141_92228_34 | 57456 | 59162 | - | DUF6020 |
| TC | k141_92228 | k141_92228_35 | 59344 | 60375 | - | 9.B.97.1.2 |
| CAZyme | k141_92228 | k141_92228_36 | 60400 | 65379 | - | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| CAZyme | k141_92228 | k141_92228_37 | 65395 | 67845 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_92228 | k141_92228_38 | 67876 | 71400 | - | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_92228 | k141_92228_39 | 71472 | 75035 | - | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_92228 | k141_92228_40 | 75243 | 78641 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| pfam | k141_92228 | k141_92228_41 | 78742 | 79695 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_92228 | k141_92228_42 | 79716 | 80939 | - | GT4 |
| CAZyme | k141_92228 | k141_92228_43 | 80966 | 82096 | - | GT2 |
Gene ID: k141_92228_28
Type: CAZyme
Location: 45833 - 49252 (+)
Type: CAZyme
Location: 45833 - 49252 (+)
Gene ID: k141_92228_29
Type: pfam
Location: 49620 - 51356 (-)
Type: pfam
Location: 49620 - 51356 (-)
Gene ID: k141_92228_30
Type: TC
Location: 51605 - 52393 (-)
Type: TC
Location: 51605 - 52393 (-)
Gene ID: k141_92228_31
Type: TC
Location: 52403 - 53248 (-)
Type: TC
Location: 52403 - 53248 (-)
Gene ID: k141_92228_32
Type: CAZyme
Location: 53402 - 56413 (-)
Type: CAZyme
Location: 53402 - 56413 (-)
Gene ID: k141_92228_33
Type: CAZyme
Location: 56510 - 57439 (-)
Type: CAZyme
Location: 56510 - 57439 (-)
Gene ID: k141_92228_34
Type: pfam
Location: 57456 - 59162 (-)
Type: pfam
Location: 57456 - 59162 (-)
Gene ID: k141_92228_35
Type: TC
Location: 59344 - 60375 (-)
Type: TC
Location: 59344 - 60375 (-)
Gene ID: k141_92228_36
Type: CAZyme
Location: 60400 - 65379 (-)
Type: CAZyme
Location: 60400 - 65379 (-)
Gene ID: k141_92228_37
Type: CAZyme
Location: 65395 - 67845 (-)
Type: CAZyme
Location: 65395 - 67845 (-)
Gene ID: k141_92228_38
Type: CAZyme
Location: 67876 - 71400 (-)
Type: CAZyme
Location: 67876 - 71400 (-)
Gene ID: k141_92228_39
Type: CAZyme
Location: 71472 - 75035 (-)
Type: CAZyme
Location: 71472 - 75035 (-)
Gene ID: k141_92228_40
Type: CAZyme
Location: 75243 - 78641 (-)
Type: CAZyme
Location: 75243 - 78641 (-)
Gene ID: k141_92228_41
Type: pfam
Location: 78742 - 79695 (-)
Type: pfam
Location: 78742 - 79695 (-)
Gene ID: k141_92228_42
Type: CAZyme
Location: 79716 - 80939 (-)
Type: CAZyme
Location: 79716 - 80939 (-)
Gene ID: k141_92228_43
Type: CAZyme
Location: 80966 - 82096 (-)
Type: CAZyme
Location: 80966 - 82096 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.