Cluster: AG334_bin.23_CGC11
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: AG334_bin.23
- CGC Family ID: CGCFAM_01159
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_173281 | k141_173281_6 | 6509 | 7870 | - | 2.A.8.1.8 |
| TF | k141_173281 | k141_173281_7 | 8104 | 8781 | + | GntR |
| CAZyme | k141_173281 | k141_173281_8 | 8857 | 10566 | - | GH154 |
| CAZyme | k141_173281 | k141_173281_9 | 10569 | 11792 | - | GH28 |
| CAZyme | k141_173281 | k141_173281_10 | 11810 | 12742 | - | GH43_24 |
| pfam | k141_173281 | k141_173281_11 | 12742 | 13554 | - | DUF7402 |
| CAZyme | k141_173281 | k141_173281_12 | 13568 | 15199 | - | CBM91 | GH43_11 |
| pfam | k141_173281 | k141_173281_13 | 15196 | 16053 | - | CN_hydrolase |
| CAZyme | k141_173281 | k141_173281_14 | 16148 | 17299 | - | GH88 |
| NULL(UNKNOWN) | k141_173281 | k141_173281_15 | 17280 | 17933 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_173281 | k141_173281_16 | 18012 | 18875 | - | 4.A.6.1.19 |
| TC | k141_173281 | k141_173281_17 | 18868 | 19764 | - | 4.A.6.1.22 |
| TC | k141_173281 | k141_173281_18 | 19844 | 20332 | - | 4.A.6.1.3 |
| pfam | k141_173281 | k141_173281_19 | 20377 | 20808 | - | EIIA-man |
| CAZyme | k141_173281 | k141_173281_20 | 20963 | 22771 | - | GH154 |
Gene ID: k141_173281_6
Type: TC
Location: 6509 - 7870 (-)
Type: TC
Location: 6509 - 7870 (-)
Gene ID: k141_173281_7
Type: TF
Location: 8104 - 8781 (+)
Type: TF
Location: 8104 - 8781 (+)
Gene ID: k141_173281_8
Type: CAZyme
Location: 8857 - 10566 (-)
Type: CAZyme
Location: 8857 - 10566 (-)
Gene ID: k141_173281_9
Type: CAZyme
Location: 10569 - 11792 (-)
Type: CAZyme
Location: 10569 - 11792 (-)
Gene ID: k141_173281_10
Type: CAZyme
Location: 11810 - 12742 (-)
Type: CAZyme
Location: 11810 - 12742 (-)
Gene ID: k141_173281_11
Type: pfam
Location: 12742 - 13554 (-)
Type: pfam
Location: 12742 - 13554 (-)
Gene ID: k141_173281_12
Type: CAZyme
Location: 13568 - 15199 (-)
Type: CAZyme
Location: 13568 - 15199 (-)
Gene ID: k141_173281_13
Type: pfam
Location: 15196 - 16053 (-)
Type: pfam
Location: 15196 - 16053 (-)
Gene ID: k141_173281_14
Type: CAZyme
Location: 16148 - 17299 (-)
Type: CAZyme
Location: 16148 - 17299 (-)
Gene ID: k141_173281_15
Type:
Location: 17280 - 17933 (-)
Type:
Location: 17280 - 17933 (-)
Gene ID: k141_173281_16
Type: TC
Location: 18012 - 18875 (-)
Type: TC
Location: 18012 - 18875 (-)
Gene ID: k141_173281_17
Type: TC
Location: 18868 - 19764 (-)
Type: TC
Location: 18868 - 19764 (-)
Gene ID: k141_173281_18
Type: TC
Location: 19844 - 20332 (-)
Type: TC
Location: 19844 - 20332 (-)
Gene ID: k141_173281_19
Type: pfam
Location: 20377 - 20808 (-)
Type: pfam
Location: 20377 - 20808 (-)
Gene ID: k141_173281_20
Type: CAZyme
Location: 20963 - 22771 (-)
Type: CAZyme
Location: 20963 - 22771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.