Cluster: AG287_bin.71_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: AG287_bin.71
- CGC Family ID: CGCFAM_00011
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_106004 | k141_106004_2 | 1728 | 3719 | - | GT2 |
| CAZyme | k141_106004 | k141_106004_3 | 3915 | 5051 | + | GT2 |
| TC | k141_106004 | k141_106004_4 | 5209 | 5454 | + | 3.A.1.103.4 |
| pfam | k141_106004 | k141_106004_5 | 5458 | 6021 | + | ABC2_membrane |
| TC | k141_106004 | k141_106004_6 | 6031 | 6786 | + | 3.A.1.103.1 |
| CAZyme | k141_106004 | k141_106004_7 | 6788 | 7903 | + | GT2 |
| CAZyme | k141_106004 | k141_106004_8 | 7912 | 8970 | + | GT2 |
| CAZyme | k141_106004 | k141_106004_9 | 8992 | 10227 | + | GT4 |
| CAZyme | k141_106004 | k141_106004_10 | 10343 | 11305 | - | GT81 |
| TC | k141_106004 | k141_106004_11 | 11428 | 12096 | + | 3.A.1.103.5 |
Gene ID: k141_106004_2
Type: CAZyme
Location: 1728 - 3719 (-)
Type: CAZyme
Location: 1728 - 3719 (-)
Gene ID: k141_106004_3
Type: CAZyme
Location: 3915 - 5051 (+)
Type: CAZyme
Location: 3915 - 5051 (+)
Gene ID: k141_106004_4
Type: TC
Location: 5209 - 5454 (+)
Type: TC
Location: 5209 - 5454 (+)
Gene ID: k141_106004_5
Type: pfam
Location: 5458 - 6021 (+)
Type: pfam
Location: 5458 - 6021 (+)
Gene ID: k141_106004_6
Type: TC
Location: 6031 - 6786 (+)
Type: TC
Location: 6031 - 6786 (+)
Gene ID: k141_106004_7
Type: CAZyme
Location: 6788 - 7903 (+)
Type: CAZyme
Location: 6788 - 7903 (+)
Gene ID: k141_106004_8
Type: CAZyme
Location: 7912 - 8970 (+)
Type: CAZyme
Location: 7912 - 8970 (+)
Gene ID: k141_106004_9
Type: CAZyme
Location: 8992 - 10227 (+)
Type: CAZyme
Location: 8992 - 10227 (+)
Gene ID: k141_106004_10
Type: CAZyme
Location: 10343 - 11305 (-)
Type: CAZyme
Location: 10343 - 11305 (-)
Gene ID: k141_106004_11
Type: TC
Location: 11428 - 12096 (+)
Type: TC
Location: 11428 - 12096 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_106004_3 | vegetarian > omnivore | 1.39701 | 0.03301 |
| k141_106004_3 | vegetarian > vegan | 2.30225 | 0.02222 |
| k141_106004_4 | vegetarian > vegan | 2.00688 | 0.02222 |
| k141_106004_5 | vegetarian > vegan | 2.62930 | 0.01875 |
| k141_106004_6 | vegetarian > vegan | 2.36938 | 0.01875 |
| k141_106004_7 | vegetarian > omnivore | 2.28191 | 0.03301 |
| k141_106004_9 | vegetarian > omnivore | 1.88642 | 0.03301 |
| k141_106004_9 | vegetarian > vegan | 2.73838 | 0.02222 |