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Cluster: AG137_bin.21_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_140835 k141_140835_3 4120 6432 + CBM67 | GH78
CAZyme k141_140835 k141_140835_4 6404 7591 + GH88
TF k141_140835 k141_140835_5 7629 8525 + HTH_AraC
CAZyme k141_140835 k141_140835_6 8640 11093 + GH2
pfam k141_140835 k141_140835_7 11074 12438 + MatE | MatE
TF k141_140835 k141_140835_8 12520 13551 + LacI
TC k141_140835 k141_140835_9 13752 14873 + 3.A.1.1.10
TC k141_140835 k141_140835_10 14892 15797 + 3.A.1.1.29
pfam k141_140835 k141_140835_11 15902 17551 + DUF3502
CAZyme k141_140835 k141_140835_12 17683 19428 + GH35
CAZyme k141_140835 k141_140835_13 19473 20381 + GH43_22
CAZyme k141_140835 k141_140835_14 20383 22185 + GH2
CAZyme k141_140835 k141_140835_15 22229 24160 + GH127
CAZyme k141_140835 k141_140835_16 24208 25521 - GH27
Gene ID: k141_140835_3
Type: CAZyme
Location: 4120 - 6432 (+)
Gene ID: k141_140835_4
Type: CAZyme
Location: 6404 - 7591 (+)
Gene ID: k141_140835_5
Type: TF
Location: 7629 - 8525 (+)
Gene ID: k141_140835_6
Type: CAZyme
Location: 8640 - 11093 (+)
Gene ID: k141_140835_7
Type: pfam
Location: 11074 - 12438 (+)
Gene ID: k141_140835_8
Type: TF
Location: 12520 - 13551 (+)
Gene ID: k141_140835_9
Type: TC
Location: 13752 - 14873 (+)
Gene ID: k141_140835_10
Type: TC
Location: 14892 - 15797 (+)
Gene ID: k141_140835_11
Type: pfam
Location: 15902 - 17551 (+)
Gene ID: k141_140835_12
Type: CAZyme
Location: 17683 - 19428 (+)
Gene ID: k141_140835_13
Type: CAZyme
Location: 19473 - 20381 (+)
Gene ID: k141_140835_14
Type: CAZyme
Location: 20383 - 22185 (+)
Gene ID: k141_140835_15
Type: CAZyme
Location: 22229 - 24160 (+)
Gene ID: k141_140835_16
Type: CAZyme
Location: 24208 - 25521 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_140835_3 vegan > omnivore 1.26260 0.02366
k141_140835_3 vegetarian > omnivore 1.76451 0.00514
k141_140835_6 vegetarian > omnivore 1.75269 0.00514
k141_140835_6 vegan > omnivore 1.44001 0.02366
k141_140835_7 vegetarian > omnivore 1.63960 0.00514
k141_140835_8 vegetarian > omnivore 2.32676 0.00514
k141_140835_8 vegan > omnivore 1.86168 0.02366
k141_140835_10 vegan > omnivore 1.15186 0.02366
k141_140835_10 vegetarian > omnivore 1.04005 0.00514
k141_140835_13 vegetarian > omnivore 1.39773 0.00514
k141_140835_16 vegetarian > omnivore 1.20017 0.00514
k141_140835_16 vegan > omnivore 1.58807 0.02366

🧭 Explore Read Mapping of CGC

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