Cluster: AG117_bin.71_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: AG117_bin.71
- CGC Family ID: CGCFAM_00018
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_74483 | k141_74483_9 | 6808 | 9588 | + | GH73 |
| NULL(UNKNOWN) | k141_74483 | k141_74483_10 | 9764 | 10852 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_74483 | k141_74483_11 | 11083 | 12138 | + | 9.B.18.2.1 |
| pfam | k141_74483 | k141_74483_12 | 12140 | 13357 | + | Epimerase | Polysacc_synt_C |
| CAZyme | k141_74483 | k141_74483_13 | 13417 | 14481 | + | GT4 |
| pfam | k141_74483 | k141_74483_14 | 14502 | 15677 | + | Epimerase_2 |
| CAZyme | k141_74483 | k141_74483_15 | 15677 | 16918 | + | GT4 |
| CAZyme | k141_74483 | k141_74483_16 | 16945 | 17658 | + | GT2 |
| pfam | k141_74483 | k141_74483_17 | 17655 | 18011 | + | DUF2304 |
| pfam | k141_74483 | k141_74483_18 | 18037 | 20220 | + | DUF7654 | DUF7657 |
| CAZyme | k141_74483 | k141_74483_19 | 20299 | 22698 | - | GT2 | GT2 |
| CAZyme | k141_74483 | k141_74483_20 | 22774 | 24015 | - | GT111 |
Gene ID: k141_74483_9
Type: CAZyme
Location: 6808 - 9588 (+)
Type: CAZyme
Location: 6808 - 9588 (+)
Gene ID: k141_74483_10
Type:
Location: 9764 - 10852 (+)
Type:
Location: 9764 - 10852 (+)
Gene ID: k141_74483_11
Type: TC
Location: 11083 - 12138 (+)
Type: TC
Location: 11083 - 12138 (+)
Gene ID: k141_74483_12
Type: pfam
Location: 12140 - 13357 (+)
Type: pfam
Location: 12140 - 13357 (+)
Gene ID: k141_74483_13
Type: CAZyme
Location: 13417 - 14481 (+)
Type: CAZyme
Location: 13417 - 14481 (+)
Gene ID: k141_74483_14
Type: pfam
Location: 14502 - 15677 (+)
Type: pfam
Location: 14502 - 15677 (+)
Gene ID: k141_74483_15
Type: CAZyme
Location: 15677 - 16918 (+)
Type: CAZyme
Location: 15677 - 16918 (+)
Gene ID: k141_74483_16
Type: CAZyme
Location: 16945 - 17658 (+)
Type: CAZyme
Location: 16945 - 17658 (+)
Gene ID: k141_74483_17
Type: pfam
Location: 17655 - 18011 (+)
Type: pfam
Location: 17655 - 18011 (+)
Gene ID: k141_74483_18
Type: pfam
Location: 18037 - 20220 (+)
Type: pfam
Location: 18037 - 20220 (+)
Gene ID: k141_74483_19
Type: CAZyme
Location: 20299 - 22698 (-)
Type: CAZyme
Location: 20299 - 22698 (-)
Gene ID: k141_74483_20
Type: CAZyme
Location: 22774 - 24015 (-)
Type: CAZyme
Location: 22774 - 24015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_74483_9 | vegan > omnivore | 1.45255 | 0.01134 |
| k141_74483_9 | vegetarian > omnivore | 2.19587 | 0.01185 |
| k141_74483_10 | vegetarian > omnivore | 1.90186 | 0.01523 |
| k141_74483_12 | vegetarian > omnivore | 1.49956 | 0.01185 |
| k141_74483_12 | vegetarian > vegan | 1.94616 | 0.00614 |
| k141_74483_13 | vegan > omnivore | 2.31757 | 0.01134 |
| k141_74483_13 | vegetarian > omnivore | 3.12471 | 0.01523 |
| k141_74483_15 | vegetarian > omnivore | 1.37724 | 0.01523 |
| k141_74483_16 | vegan > omnivore | 1.59206 | 0.01134 |
| k141_74483_16 | vegetarian > omnivore | 2.62301 | 0.01523 |
| k141_74483_19 | vegan > omnivore | 2.38568 | 0.01134 |
| k141_74483_19 | vegetarian > omnivore | 3.10807 | 0.01523 |
| k141_74483_20 | vegan > omnivore | 1.11581 | 0.01134 |
| k141_74483_20 | vegetarian > omnivore | 1.86994 | 0.01523 |