Cluster: AG117_bin.71_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: AG117_bin.71
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_16629 | k141_16629_25 | 25965 | 28325 | + | 9.A.8.1.6 |
| TC | k141_16629 | k141_16629_26 | 28673 | 30304 | + | 4.A.1.1.3 |
| TF | k141_16629 | k141_16629_27 | 30367 | 31119 | - | HTH_6 |
| CAZyme | k141_16629 | k141_16629_28 | 31295 | 32668 | + | GH4 |
| NULL(UNKNOWN) | k141_16629 | k141_16629_29 | 32834 | 33586 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_16629 | k141_16629_30 | 33761 | 34957 | + | 2.A.1.2.18 |
| CAZyme | k141_16629 | k141_16629_31 | 35140 | 36516 | + | GH13_20 |
Gene ID: k141_16629_25
Type: TC
Location: 25965 - 28325 (+)
Type: TC
Location: 25965 - 28325 (+)
Gene ID: k141_16629_26
Type: TC
Location: 28673 - 30304 (+)
Type: TC
Location: 28673 - 30304 (+)
Gene ID: k141_16629_27
Type: TF
Location: 30367 - 31119 (-)
Type: TF
Location: 30367 - 31119 (-)
Gene ID: k141_16629_28
Type: CAZyme
Location: 31295 - 32668 (+)
Type: CAZyme
Location: 31295 - 32668 (+)
Gene ID: k141_16629_29
Type:
Location: 32834 - 33586 (+)
Type:
Location: 32834 - 33586 (+)
Gene ID: k141_16629_30
Type: TC
Location: 33761 - 34957 (+)
Type: TC
Location: 33761 - 34957 (+)
Gene ID: k141_16629_31
Type: CAZyme
Location: 35140 - 36516 (+)
Type: CAZyme
Location: 35140 - 36516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_16629_28 | vegan > omnivore | 1.49399 | 0.01134 |
| k141_16629_29 | vegan > omnivore | 1.76944 | 0.01134 |