Cluster: AG079_bin.72_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: AG079_bin.72
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_18414 | k141_18414_11 | 9523 | 9966 | + | 4.A.6.1.16 |
| pfam | k141_18414 | k141_18414_12 | 9966 | 10247 | + | YajC |
| TC | k141_18414 | k141_18414_13 | 10284 | 10766 | + | 4.A.6.1.4 |
| TC | k141_18414 | k141_18414_14 | 10857 | 11657 | + | 4.A.6.1.4 |
| TC | k141_18414 | k141_18414_15 | 11647 | 12729 | + | 4.A.6.1.4 |
| TF | k141_18414 | k141_18414_16 | 12915 | 13646 | + | GntR |
| STP | k141_18414 | k141_18414_17 | 13761 | 14927 | + | SIS | SIS |
| CAZyme | k141_18414 | k141_18414_18 | 15045 | 16214 | + | CE9 |
Gene ID: k141_18414_11
Type: TC
Location: 9523 - 9966 (+)
Type: TC
Location: 9523 - 9966 (+)
Gene ID: k141_18414_12
Type: pfam
Location: 9966 - 10247 (+)
Type: pfam
Location: 9966 - 10247 (+)
Gene ID: k141_18414_13
Type: TC
Location: 10284 - 10766 (+)
Type: TC
Location: 10284 - 10766 (+)
Gene ID: k141_18414_14
Type: TC
Location: 10857 - 11657 (+)
Type: TC
Location: 10857 - 11657 (+)
Gene ID: k141_18414_15
Type: TC
Location: 11647 - 12729 (+)
Type: TC
Location: 11647 - 12729 (+)
Gene ID: k141_18414_16
Type: TF
Location: 12915 - 13646 (+)
Type: TF
Location: 12915 - 13646 (+)
Gene ID: k141_18414_17
Type: STP
Location: 13761 - 14927 (+)
Type: STP
Location: 13761 - 14927 (+)
Gene ID: k141_18414_18
Type: CAZyme
Location: 15045 - 16214 (+)
Type: CAZyme
Location: 15045 - 16214 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_18414_12 | vegan > omnivore | 1.12920 | 0.00701 |