Cluster: AG077_bin.20_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: AG077_bin.20
- CGC Family ID: CGCFAM_01141
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_204266 | k141_204266_11 | 9790 | 11253 | + | 2.A.3.2.3 |
| TC | k141_204266 | k141_204266_12 | 11894 | 14254 | + | 9.A.8.1.6 |
| TC | k141_204266 | k141_204266_13 | 14569 | 16233 | + | 4.A.1.1.3 |
| TF | k141_204266 | k141_204266_14 | 16296 | 17048 | - | HTH_6 |
| CAZyme | k141_204266 | k141_204266_15 | 17224 | 18597 | + | GH4 |
| NULL(UNKNOWN) | k141_204266 | k141_204266_16 | 18763 | 19515 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_204266 | k141_204266_17 | 19691 | 20887 | + | 2.A.1.2.18 |
| CAZyme | k141_204266 | k141_204266_18 | 21041 | 22417 | + | GH13_20 |
Gene ID: k141_204266_11
Type: TC
Location: 9790 - 11253 (+)
Type: TC
Location: 9790 - 11253 (+)
Gene ID: k141_204266_12
Type: TC
Location: 11894 - 14254 (+)
Type: TC
Location: 11894 - 14254 (+)
Gene ID: k141_204266_13
Type: TC
Location: 14569 - 16233 (+)
Type: TC
Location: 14569 - 16233 (+)
Gene ID: k141_204266_14
Type: TF
Location: 16296 - 17048 (-)
Type: TF
Location: 16296 - 17048 (-)
Gene ID: k141_204266_15
Type: CAZyme
Location: 17224 - 18597 (+)
Type: CAZyme
Location: 17224 - 18597 (+)
Gene ID: k141_204266_16
Type:
Location: 18763 - 19515 (+)
Type:
Location: 18763 - 19515 (+)
Gene ID: k141_204266_17
Type: TC
Location: 19691 - 20887 (+)
Type: TC
Location: 19691 - 20887 (+)
Gene ID: k141_204266_18
Type: CAZyme
Location: 21041 - 22417 (+)
Type: CAZyme
Location: 21041 - 22417 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_204266_11 | vegan > omnivore | 1.50441 | 0.01441 |
| k141_204266_13 | vegan > omnivore | 1.00964 | 0.01441 |
| k141_204266_15 | vegan > omnivore | 1.57610 | 0.01441 |
| k141_204266_16 | vegan > omnivore | 1.75044 | 0.01441 |