Cluster: A93.bin_5_CGC24
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 2
- Substrate:
- Genome ID: A93.bin_5
- CGC Family ID: CGCFAM_06832
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A93_contig_410 | A93_contig_410_1652 | 1774529 | 1776793 | + | GT35 |
| peptidase | A93_contig_410 | A93_contig_410_1653 | 1776776 | 1777675 | - | S08.UPA |
| pfam | A93_contig_410 | A93_contig_410_1654 | 1777857 | 1779935 | + | ACR_tran | MMPL | MMPL |
| TC | A93_contig_410 | A93_contig_410_1655 | 1779954 | 1781945 | + | 9.B.74.1.4 |
| STP | A93_contig_410 | A93_contig_410_1656 | 1781956 | 1782558 | + | TetR_N |
| TC | A93_contig_410 | A93_contig_410_1657 | 1782715 | 1785039 | + | 3.A.1.135.5 |
| pfam | A93_contig_410 | A93_contig_410_1658 | 1785036 | 1785578 | + | DUF1854 |
| TC | A93_contig_410 | A93_contig_410_1659 | 1785602 | 1787821 | + | 3.A.1.106.2 |
| TC | A93_contig_410 | A93_contig_410_1660 | 1787805 | 1789529 | + | 3.A.1.135.5 |
| TC | A93_contig_410 | A93_contig_410_1661 | 1789532 | 1791265 | + | 3.A.1.135.5 |
| CAZyme | A93_contig_410 | A93_contig_410_1662 | 1791322 | 1793760 | - | GH94 |
| TF | A93_contig_410 | A93_contig_410_1663 | 1794276 | 1795286 | + | LacI |
| NULL(UNKNOWN) | A93_contig_410 | A93_contig_410_1664 | 1795390 | 1796790 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A93_contig_410 | A93_contig_410_1665 | 1796878 | 1797855 | + | 3.A.1.1.23 |
| TC | A93_contig_410 | A93_contig_410_1666 | 1797856 | 1798734 | + | 3.A.1.1.48 |
| TC | A93_contig_410 | A93_contig_410_1667 | 1798947 | 1799432 | + | 3.D.1.5.1 |
| TC | A93_contig_410 | A93_contig_410_1668 | 1799422 | 1801311 | + | 3.D.1.5.1 |
Gene ID: A93_contig_410_1652
Type: CAZyme
Location: 1774529 - 1776793 (+)
Type: CAZyme
Location: 1774529 - 1776793 (+)
Gene ID: A93_contig_410_1653
Type: peptidase
Location: 1776776 - 1777675 (-)
Type: peptidase
Location: 1776776 - 1777675 (-)
Gene ID: A93_contig_410_1654
Type: pfam
Location: 1777857 - 1779935 (+)
Type: pfam
Location: 1777857 - 1779935 (+)
Gene ID: A93_contig_410_1655
Type: TC
Location: 1779954 - 1781945 (+)
Type: TC
Location: 1779954 - 1781945 (+)
Gene ID: A93_contig_410_1656
Type: STP
Location: 1781956 - 1782558 (+)
Type: STP
Location: 1781956 - 1782558 (+)
Gene ID: A93_contig_410_1657
Type: TC
Location: 1782715 - 1785039 (+)
Type: TC
Location: 1782715 - 1785039 (+)
Gene ID: A93_contig_410_1658
Type: pfam
Location: 1785036 - 1785578 (+)
Type: pfam
Location: 1785036 - 1785578 (+)
Gene ID: A93_contig_410_1659
Type: TC
Location: 1785602 - 1787821 (+)
Type: TC
Location: 1785602 - 1787821 (+)
Gene ID: A93_contig_410_1660
Type: TC
Location: 1787805 - 1789529 (+)
Type: TC
Location: 1787805 - 1789529 (+)
Gene ID: A93_contig_410_1661
Type: TC
Location: 1789532 - 1791265 (+)
Type: TC
Location: 1789532 - 1791265 (+)
Gene ID: A93_contig_410_1662
Type: CAZyme
Location: 1791322 - 1793760 (-)
Type: CAZyme
Location: 1791322 - 1793760 (-)
Gene ID: A93_contig_410_1663
Type: TF
Location: 1794276 - 1795286 (+)
Type: TF
Location: 1794276 - 1795286 (+)
Gene ID: A93_contig_410_1664
Type:
Location: 1795390 - 1796790 (+)
Type:
Location: 1795390 - 1796790 (+)
Gene ID: A93_contig_410_1665
Type: TC
Location: 1796878 - 1797855 (+)
Type: TC
Location: 1796878 - 1797855 (+)
Gene ID: A93_contig_410_1666
Type: TC
Location: 1797856 - 1798734 (+)
Type: TC
Location: 1797856 - 1798734 (+)
Gene ID: A93_contig_410_1667
Type: TC
Location: 1798947 - 1799432 (+)
Type: TC
Location: 1798947 - 1799432 (+)
Gene ID: A93_contig_410_1668
Type: TC
Location: 1799422 - 1801311 (+)
Type: TC
Location: 1799422 - 1801311 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp003491505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A93_contig_410_1665 | vegan > omnivore | 1.10636 | 0.01176 |