Cluster: A93.bin_5_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A93.bin_5
- CGC Family ID: CGCFAM_00334
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A93_contig_410 | A93_contig_410_1260 | 1357506 | 1359146 | + | CBM13 | GH10 |
| pfam | A93_contig_410 | A93_contig_410_1261 | 1359397 | 1360470 | + | UPF0236 |
| TF | A93_contig_410 | A93_contig_410_1262 | 1360533 | 1361390 | - | HTH_AraC | HTH_AraC |
| CAZyme | A93_contig_410 | A93_contig_410_1263 | 1361755 | 1364793 | + | GH2 |
| TC | A93_contig_410 | A93_contig_410_1264 | 1364858 | 1366228 | + | 2.A.2.3.3 |
Gene ID: A93_contig_410_1260
Type: CAZyme
Location: 1357506 - 1359146 (+)
Type: CAZyme
Location: 1357506 - 1359146 (+)
Gene ID: A93_contig_410_1261
Type: pfam
Location: 1359397 - 1360470 (+)
Type: pfam
Location: 1359397 - 1360470 (+)
Gene ID: A93_contig_410_1262
Type: TF
Location: 1360533 - 1361390 (-)
Type: TF
Location: 1360533 - 1361390 (-)
Gene ID: A93_contig_410_1263
Type: CAZyme
Location: 1361755 - 1364793 (+)
Type: CAZyme
Location: 1361755 - 1364793 (+)
Gene ID: A93_contig_410_1264
Type: TC
Location: 1364858 - 1366228 (+)
Type: TC
Location: 1364858 - 1366228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp003491505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A93_contig_410_1260 | vegan > omnivore | 3.04370 | 0.01176 |
| A93_contig_410_1262 | vegan > omnivore | 1.09408 | 0.01176 |
| A93_contig_410_1263 | vegetarian > omnivore | 1.16271 | 0.03816 |