Cluster: A93.bin_5_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A93.bin_5
- CGC Family ID: CGCFAM_06831
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A93_contig_410 | A93_contig_410_805 | 873670 | 875550 | + | 1.B.52.2.2 |
| pfam | A93_contig_410 | A93_contig_410_806 | 876042 | 876944 | + | PBP_like_2 | PBP_like_2 |
| TC | A93_contig_410 | A93_contig_410_807 | 876956 | 877798 | + | 3.A.1.7.5 |
| TC | A93_contig_410 | A93_contig_410_808 | 877799 | 878674 | + | 3.A.1.7.5 |
| TC | A93_contig_410 | A93_contig_410_809 | 878689 | 879441 | + | 3.A.1.7.5 |
| pfam | A93_contig_410 | A93_contig_410_810 | 879441 | 880088 | + | PhoU | PhoU |
| TC | A93_contig_410 | A93_contig_410_811 | 880191 | 882284 | + | 1.B.52.2.1 |
| pfam | A93_contig_410 | A93_contig_410_812 | 882616 | 885777 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | A93_contig_410 | A93_contig_410_813 | 885810 | 888272 | + | GT35 |
| STP | A93_contig_410 | A93_contig_410_814 | 888339 | 889028 | + | Peptidase_M23 |
| CAZyme | A93_contig_410 | A93_contig_410_815 | 889138 | 891606 | + | CBM22 | GH43_16 |
Gene ID: A93_contig_410_805
Type: TC
Location: 873670 - 875550 (+)
Type: TC
Location: 873670 - 875550 (+)
Gene ID: A93_contig_410_806
Type: pfam
Location: 876042 - 876944 (+)
Type: pfam
Location: 876042 - 876944 (+)
Gene ID: A93_contig_410_807
Type: TC
Location: 876956 - 877798 (+)
Type: TC
Location: 876956 - 877798 (+)
Gene ID: A93_contig_410_808
Type: TC
Location: 877799 - 878674 (+)
Type: TC
Location: 877799 - 878674 (+)
Gene ID: A93_contig_410_809
Type: TC
Location: 878689 - 879441 (+)
Type: TC
Location: 878689 - 879441 (+)
Gene ID: A93_contig_410_810
Type: pfam
Location: 879441 - 880088 (+)
Type: pfam
Location: 879441 - 880088 (+)
Gene ID: A93_contig_410_811
Type: TC
Location: 880191 - 882284 (+)
Type: TC
Location: 880191 - 882284 (+)
Gene ID: A93_contig_410_812
Type: pfam
Location: 882616 - 885777 (+)
Type: pfam
Location: 882616 - 885777 (+)
Gene ID: A93_contig_410_813
Type: CAZyme
Location: 885810 - 888272 (+)
Type: CAZyme
Location: 885810 - 888272 (+)
Gene ID: A93_contig_410_814
Type: STP
Location: 888339 - 889028 (+)
Type: STP
Location: 888339 - 889028 (+)
Gene ID: A93_contig_410_815
Type: CAZyme
Location: 889138 - 891606 (+)
Type: CAZyme
Location: 889138 - 891606 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp003491505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A93_contig_410_808 | vegan > omnivore | 1.37713 | 0.01176 |
| A93_contig_410_811 | vegan > omnivore | 1.13220 | 0.01176 |