Cluster: A89.bin_8_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: A89.bin_8
- CGC Family ID: CGCFAM_00873
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A89_contig_1538 | A89_contig_1538_118 | 134102 | 135100 | - | GT2 |
| pfam | A89_contig_1538 | A89_contig_1538_119 | 135113 | 136189 | - | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_8 | DUF4369 |
| TC | A89_contig_1538 | A89_contig_1538_120 | 136202 | 137845 | - | 4.C.1.1.4 |
| pfam | A89_contig_1538 | A89_contig_1538_121 | 138098 | 139423 | + | OEP | OEP |
| TC | A89_contig_1538 | A89_contig_1538_122 | 139431 | 140603 | + | 2.A.6.2.35 |
| TC | A89_contig_1538 | A89_contig_1538_123 | 140600 | 141340 | + | 3.A.1.122.2 |
| TC | A89_contig_1538 | A89_contig_1538_124 | 141345 | 142565 | + | 3.A.1.122.12 |
| TC | A89_contig_1538 | A89_contig_1538_125 | 142558 | 143646 | + | 8.A.59.2.1 |
Gene ID: A89_contig_1538_118
Type: CAZyme
Location: 134102 - 135100 (-)
Type: CAZyme
Location: 134102 - 135100 (-)
Gene ID: A89_contig_1538_119
Type: pfam
Location: 135113 - 136189 (-)
Type: pfam
Location: 135113 - 136189 (-)
Gene ID: A89_contig_1538_120
Type: TC
Location: 136202 - 137845 (-)
Type: TC
Location: 136202 - 137845 (-)
Gene ID: A89_contig_1538_121
Type: pfam
Location: 138098 - 139423 (+)
Type: pfam
Location: 138098 - 139423 (+)
Gene ID: A89_contig_1538_122
Type: TC
Location: 139431 - 140603 (+)
Type: TC
Location: 139431 - 140603 (+)
Gene ID: A89_contig_1538_123
Type: TC
Location: 140600 - 141340 (+)
Type: TC
Location: 140600 - 141340 (+)
Gene ID: A89_contig_1538_124
Type: TC
Location: 141345 - 142565 (+)
Type: TC
Location: 141345 - 142565 (+)
Gene ID: A89_contig_1538_125
Type: TC
Location: 142558 - 143646 (+)
Type: TC
Location: 142558 - 143646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp000437795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A89_contig_1538_118 | vegan > omnivore | 1.44018 | 0.01033 |
| A89_contig_1538_119 | vegan > omnivore | 1.92407 | 0.01033 |
| A89_contig_1538_120 | vegan > omnivore | 2.01815 | 0.01033 |
| A89_contig_1538_121 | vegan > omnivore | 1.54099 | 0.01033 |
| A89_contig_1538_122 | vegan > omnivore | 1.64891 | 0.01033 |