Cluster: A89.bin_8_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: A89.bin_8
- CGC Family ID: CGCFAM_00145
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A89_contig_869 | A89_contig_869_280 | 312363 | 315503 | + | 1.B.14.6.1 |
| TC | A89_contig_869 | A89_contig_869_281 | 315525 | 317102 | + | 8.A.46.1.5 |
| NULL(UNKNOWN) | A89_contig_869 | A89_contig_869_282 | 317198 | 318130 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A89_contig_869 | A89_contig_869_283 | 318282 | 320186 | + | GH16_3 |
| CAZyme | A89_contig_869 | A89_contig_869_284 | 320204 | 321367 | + | GH16_3 |
| CAZyme | A89_contig_869 | A89_contig_869_285 | 321374 | 322243 | + | GH16_3 |
| CAZyme | A89_contig_869 | A89_contig_869_286 | 322265 | 324502 | + | GH3 |
| CAZyme | A89_contig_869 | A89_contig_869_287 | 324513 | 326042 | + | GH128 |
| pfam | A89_contig_869 | A89_contig_869_288 | 326310 | 327569 | + | AAA_14 | DUF4143 |
| pfam | A89_contig_869 | A89_contig_869_289 | 327822 | 328796 | - | PFK |
| TC | A89_contig_869 | A89_contig_869_290 | 328951 | 331860 | - | 1.C.105.2.12 |
| TC | A89_contig_869 | A89_contig_869_291 | 331982 | 333811 | + | 3.A.1.106.1 |
Gene ID: A89_contig_869_280
Type: TC
Location: 312363 - 315503 (+)
Type: TC
Location: 312363 - 315503 (+)
Gene ID: A89_contig_869_281
Type: TC
Location: 315525 - 317102 (+)
Type: TC
Location: 315525 - 317102 (+)
Gene ID: A89_contig_869_282
Type:
Location: 317198 - 318130 (+)
Type:
Location: 317198 - 318130 (+)
Gene ID: A89_contig_869_283
Type: CAZyme
Location: 318282 - 320186 (+)
Type: CAZyme
Location: 318282 - 320186 (+)
Gene ID: A89_contig_869_284
Type: CAZyme
Location: 320204 - 321367 (+)
Type: CAZyme
Location: 320204 - 321367 (+)
Gene ID: A89_contig_869_285
Type: CAZyme
Location: 321374 - 322243 (+)
Type: CAZyme
Location: 321374 - 322243 (+)
Gene ID: A89_contig_869_286
Type: CAZyme
Location: 322265 - 324502 (+)
Type: CAZyme
Location: 322265 - 324502 (+)
Gene ID: A89_contig_869_287
Type: CAZyme
Location: 324513 - 326042 (+)
Type: CAZyme
Location: 324513 - 326042 (+)
Gene ID: A89_contig_869_288
Type: pfam
Location: 326310 - 327569 (+)
Type: pfam
Location: 326310 - 327569 (+)
Gene ID: A89_contig_869_289
Type: pfam
Location: 327822 - 328796 (-)
Type: pfam
Location: 327822 - 328796 (-)
Gene ID: A89_contig_869_290
Type: TC
Location: 328951 - 331860 (-)
Type: TC
Location: 328951 - 331860 (-)
Gene ID: A89_contig_869_291
Type: TC
Location: 331982 - 333811 (+)
Type: TC
Location: 331982 - 333811 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp000437795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A89_contig_869_281 | vegan > omnivore | 1.51127 | 0.01033 |
| A89_contig_869_282 | vegan > omnivore | 1.88342 | 0.01033 |
| A89_contig_869_283 | vegan > omnivore | 1.83235 | 0.01033 |
| A89_contig_869_284 | vegan > omnivore | 1.74416 | 0.01033 |
| A89_contig_869_285 | vegan > omnivore | 1.71462 | 0.01033 |
| A89_contig_869_286 | vegan > omnivore | 1.69360 | 0.01033 |
| A89_contig_869_287 | vegan > omnivore | 1.55401 | 0.01033 |
| A89_contig_869_290 | vegan > omnivore | 1.81082 | 0.01033 |