Cluster: A89.bin_8_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: A89.bin_8
- CGC Family ID: CGCFAM_01330
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A89_contig_873 | A89_contig_873_13 | 9306 | 10331 | + | 2.A.35.1.5 |
| pfam | A89_contig_873 | A89_contig_873_14 | 10406 | 10930 | - | Ferritin |
| CAZyme | A89_contig_873 | A89_contig_873_15 | 11009 | 12415 | - | GH57 |
| CAZyme | A89_contig_873 | A89_contig_873_16 | 12429 | 13676 | - | GT4 |
| CAZyme | A89_contig_873 | A89_contig_873_17 | 13711 | 15657 | - | GH133 |
| pfam | A89_contig_873 | A89_contig_873_18 | 15783 | 16766 | - | DAGK_cat | YegS_C |
| pfam | A89_contig_873 | A89_contig_873_19 | 16839 | 17444 | + | DUF308 |
| TC | A89_contig_873 | A89_contig_873_20 | 17448 | 18092 | - | 2.A.115.2.14 |
Gene ID: A89_contig_873_13
Type: TC
Location: 9306 - 10331 (+)
Type: TC
Location: 9306 - 10331 (+)
Gene ID: A89_contig_873_14
Type: pfam
Location: 10406 - 10930 (-)
Type: pfam
Location: 10406 - 10930 (-)
Gene ID: A89_contig_873_15
Type: CAZyme
Location: 11009 - 12415 (-)
Type: CAZyme
Location: 11009 - 12415 (-)
Gene ID: A89_contig_873_16
Type: CAZyme
Location: 12429 - 13676 (-)
Type: CAZyme
Location: 12429 - 13676 (-)
Gene ID: A89_contig_873_17
Type: CAZyme
Location: 13711 - 15657 (-)
Type: CAZyme
Location: 13711 - 15657 (-)
Gene ID: A89_contig_873_18
Type: pfam
Location: 15783 - 16766 (-)
Type: pfam
Location: 15783 - 16766 (-)
Gene ID: A89_contig_873_19
Type: pfam
Location: 16839 - 17444 (+)
Type: pfam
Location: 16839 - 17444 (+)
Gene ID: A89_contig_873_20
Type: TC
Location: 17448 - 18092 (-)
Type: TC
Location: 17448 - 18092 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp000437795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A89_contig_873_13 | vegan > omnivore | 1.45705 | 0.01033 |
| A89_contig_873_14 | vegan > omnivore | 1.96399 | 0.01033 |
| A89_contig_873_15 | vegan > omnivore | 1.88977 | 0.01033 |
| A89_contig_873_16 | vegan > omnivore | 1.93096 | 0.01033 |
| A89_contig_873_17 | vegan > omnivore | 1.40038 | 0.01033 |
| A89_contig_873_18 | vegan > omnivore | 1.48306 | 0.01033 |
| A89_contig_873_19 | vegan > omnivore | 2.10964 | 0.01033 |
| A89_contig_873_20 | vegan > omnivore | 2.09686 | 0.01033 |