Cluster: A89.bin_8_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A89.bin_8
- CGC Family ID: CGCFAM_06822
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A89_contig_1538 | A89_contig_1538_372 | 410081 | 410848 | + | GT51 |
| pfam | A89_contig_1538 | A89_contig_1538_373 | 410918 | 413332 | - | NAGPA |
| pfam | A89_contig_1538 | A89_contig_1538_374 | 413491 | 413784 | - | Dabb |
| TC | A89_contig_1538 | A89_contig_1538_375 | 413797 | 415416 | - | 3.A.1.121.4 |
| pfam | A89_contig_1538 | A89_contig_1538_376 | 415568 | 417277 | - | SusD_RagB | SusD-like_3 |
| TC | A89_contig_1538 | A89_contig_1538_377 | 417298 | 420750 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | A89_contig_1538 | A89_contig_1538_378 | 420877 | 421671 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A89_contig_1538 | A89_contig_1538_379 | 421626 | 422111 | - | DDE_5 |
| TC | A89_contig_1538 | A89_contig_1538_380 | 422672 | 424447 | + | 3.A.18.1.1 |
| pfam | A89_contig_1538 | A89_contig_1538_381 | 424454 | 425161 | + | DUF3256 |
| CAZyme | A89_contig_1538 | A89_contig_1538_382 | 425163 | 425948 | + | GH25 |
Gene ID: A89_contig_1538_372
Type: CAZyme
Location: 410081 - 410848 (+)
Type: CAZyme
Location: 410081 - 410848 (+)
Gene ID: A89_contig_1538_373
Type: pfam
Location: 410918 - 413332 (-)
Type: pfam
Location: 410918 - 413332 (-)
Gene ID: A89_contig_1538_374
Type: pfam
Location: 413491 - 413784 (-)
Type: pfam
Location: 413491 - 413784 (-)
Gene ID: A89_contig_1538_375
Type: TC
Location: 413797 - 415416 (-)
Type: TC
Location: 413797 - 415416 (-)
Gene ID: A89_contig_1538_376
Type: pfam
Location: 415568 - 417277 (-)
Type: pfam
Location: 415568 - 417277 (-)
Gene ID: A89_contig_1538_377
Type: TC
Location: 417298 - 420750 (-)
Type: TC
Location: 417298 - 420750 (-)
Gene ID: A89_contig_1538_378
Type:
Location: 420877 - 421671 (-)
Type:
Location: 420877 - 421671 (-)
Gene ID: A89_contig_1538_379
Type: pfam
Location: 421626 - 422111 (-)
Type: pfam
Location: 421626 - 422111 (-)
Gene ID: A89_contig_1538_380
Type: TC
Location: 422672 - 424447 (+)
Type: TC
Location: 422672 - 424447 (+)
Gene ID: A89_contig_1538_381
Type: pfam
Location: 424454 - 425161 (+)
Type: pfam
Location: 424454 - 425161 (+)
Gene ID: A89_contig_1538_382
Type: CAZyme
Location: 425163 - 425948 (+)
Type: CAZyme
Location: 425163 - 425948 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp000437795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A89_contig_1538_372 | vegan > omnivore | 1.32125 | 0.01033 |
| A89_contig_1538_373 | vegan > omnivore | 1.66859 | 0.01033 |
| A89_contig_1538_374 | vegan > omnivore | 2.01903 | 0.01033 |
| A89_contig_1538_376 | vegan > omnivore | 1.31362 | 0.01033 |
| A89_contig_1538_381 | vegan > omnivore | 1.80139 | 0.01033 |
| A89_contig_1538_382 | vegan > omnivore | 1.81350 | 0.01033 |