Cluster: A72.CMAG_1_CGC31
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: A72.CMAG_1
- CGC Family ID: CGCFAM_00825
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A72_contig_1503 | A72_contig_1503_1553 | 1921373 | 1923472 | - | GH13_14 |
| TC | A72_contig_1503 | A72_contig_1503_1554 | 1923477 | 1924445 | - | 3.A.1.1.27 |
| TC | A72_contig_1503 | A72_contig_1503_1555 | 1924442 | 1925851 | - | 3.A.1.1.27 |
| STP | A72_contig_1503 | A72_contig_1503_1556 | 1926135 | 1927394 | - | SBP_bac_1 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1557 | 1927664 | 1929268 | + | GH13_44 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1558 | 1929714 | 1931912 | + | GH77 |
| TC | A72_contig_1503 | A72_contig_1503_1559 | 1932384 | 1932986 | - | 9.B.28.1.3 |
| TC | A72_contig_1503 | A72_contig_1503_1560 | 1933305 | 1934141 | - | 3.A.1.1.45 |
| TC | A72_contig_1503 | A72_contig_1503_1561 | 1934141 | 1934995 | - | 3.A.1.1.45 |
| TF | A72_contig_1503 | A72_contig_1503_1562 | 1935458 | 1936468 | + | LacI |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_1563 | 1936671 | 1936913 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A72_contig_1503 | A72_contig_1503_1564 | 1936820 | 1938154 | - | 3.A.1.1.45 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1565 | 1938513 | 1940288 | + | GH13_30 |
Gene ID: A72_contig_1503_1553
Type: CAZyme
Location: 1921373 - 1923472 (-)
Type: CAZyme
Location: 1921373 - 1923472 (-)
Gene ID: A72_contig_1503_1554
Type: TC
Location: 1923477 - 1924445 (-)
Type: TC
Location: 1923477 - 1924445 (-)
Gene ID: A72_contig_1503_1555
Type: TC
Location: 1924442 - 1925851 (-)
Type: TC
Location: 1924442 - 1925851 (-)
Gene ID: A72_contig_1503_1556
Type: STP
Location: 1926135 - 1927394 (-)
Type: STP
Location: 1926135 - 1927394 (-)
Gene ID: A72_contig_1503_1557
Type: CAZyme
Location: 1927664 - 1929268 (+)
Type: CAZyme
Location: 1927664 - 1929268 (+)
Gene ID: A72_contig_1503_1558
Type: CAZyme
Location: 1929714 - 1931912 (+)
Type: CAZyme
Location: 1929714 - 1931912 (+)
Gene ID: A72_contig_1503_1559
Type: TC
Location: 1932384 - 1932986 (-)
Type: TC
Location: 1932384 - 1932986 (-)
Gene ID: A72_contig_1503_1560
Type: TC
Location: 1933305 - 1934141 (-)
Type: TC
Location: 1933305 - 1934141 (-)
Gene ID: A72_contig_1503_1561
Type: TC
Location: 1934141 - 1934995 (-)
Type: TC
Location: 1934141 - 1934995 (-)
Gene ID: A72_contig_1503_1562
Type: TF
Location: 1935458 - 1936468 (+)
Type: TF
Location: 1935458 - 1936468 (+)
Gene ID: A72_contig_1503_1563
Type:
Location: 1936671 - 1936913 (+)
Type:
Location: 1936671 - 1936913 (+)
Gene ID: A72_contig_1503_1564
Type: TC
Location: 1936820 - 1938154 (-)
Type: TC
Location: 1936820 - 1938154 (-)
Gene ID: A72_contig_1503_1565
Type: CAZyme
Location: 1938513 - 1940288 (+)
Type: CAZyme
Location: 1938513 - 1940288 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium animalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.