Cluster: A72.CMAG_1_CGC24
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: A72.CMAG_1
- CGC Family ID: CGCFAM_03142
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A72_contig_1503 | A72_contig_1503_1384 | 1698851 | 1699816 | + | GT2 |
| TC | A72_contig_1503 | A72_contig_1503_1385 | 1699818 | 1701269 | - | 2.A.66.2.16 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1386 | 1701295 | 1702182 | - | GT2 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1387 | 1702201 | 1703214 | - | GT2 |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_1388 | 1703207 | 1704553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A72_contig_1503 | A72_contig_1503_1389 | 1704550 | 1705443 | - | GT2 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1390 | 1705456 | 1706220 | - | GT111 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1391 | 1706225 | 1707109 | - | GT2 |
| CAZyme | A72_contig_1503 | A72_contig_1503_1392 | 1707262 | 1708194 | - | GT32 |
| pfam | A72_contig_1503 | A72_contig_1503_1393 | 1708259 | 1709506 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | A72_contig_1503 | A72_contig_1503_1394 | 1709627 | 1711063 | - | 2.A.66.2.16 |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_1395 | 1711111 | 1712115 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A72_contig_1503 | A72_contig_1503_1396 | 1712168 | 1713031 | - | GT2 |
| TC | A72_contig_1503 | A72_contig_1503_1397 | 1713125 | 1714660 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_1398 | 1714937 | 1715278 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A72_contig_1503 | A72_contig_1503_1399 | 1715351 | 1717075 | + | 2.A.1.3.61 |
| TC | A72_contig_1503 | A72_contig_1503_1400 | 1717213 | 1718571 | - | 2.A.55.3.3 |
Gene ID: A72_contig_1503_1384
Type: CAZyme
Location: 1698851 - 1699816 (+)
Type: CAZyme
Location: 1698851 - 1699816 (+)
Gene ID: A72_contig_1503_1385
Type: TC
Location: 1699818 - 1701269 (-)
Type: TC
Location: 1699818 - 1701269 (-)
Gene ID: A72_contig_1503_1386
Type: CAZyme
Location: 1701295 - 1702182 (-)
Type: CAZyme
Location: 1701295 - 1702182 (-)
Gene ID: A72_contig_1503_1387
Type: CAZyme
Location: 1702201 - 1703214 (-)
Type: CAZyme
Location: 1702201 - 1703214 (-)
Gene ID: A72_contig_1503_1388
Type:
Location: 1703207 - 1704553 (-)
Type:
Location: 1703207 - 1704553 (-)
Gene ID: A72_contig_1503_1389
Type: CAZyme
Location: 1704550 - 1705443 (-)
Type: CAZyme
Location: 1704550 - 1705443 (-)
Gene ID: A72_contig_1503_1390
Type: CAZyme
Location: 1705456 - 1706220 (-)
Type: CAZyme
Location: 1705456 - 1706220 (-)
Gene ID: A72_contig_1503_1391
Type: CAZyme
Location: 1706225 - 1707109 (-)
Type: CAZyme
Location: 1706225 - 1707109 (-)
Gene ID: A72_contig_1503_1392
Type: CAZyme
Location: 1707262 - 1708194 (-)
Type: CAZyme
Location: 1707262 - 1708194 (-)
Gene ID: A72_contig_1503_1393
Type: pfam
Location: 1708259 - 1709506 (-)
Type: pfam
Location: 1708259 - 1709506 (-)
Gene ID: A72_contig_1503_1394
Type: TC
Location: 1709627 - 1711063 (-)
Type: TC
Location: 1709627 - 1711063 (-)
Gene ID: A72_contig_1503_1395
Type:
Location: 1711111 - 1712115 (-)
Type:
Location: 1711111 - 1712115 (-)
Gene ID: A72_contig_1503_1396
Type: CAZyme
Location: 1712168 - 1713031 (-)
Type: CAZyme
Location: 1712168 - 1713031 (-)
Gene ID: A72_contig_1503_1397
Type: TC
Location: 1713125 - 1714660 (-)
Type: TC
Location: 1713125 - 1714660 (-)
Gene ID: A72_contig_1503_1398
Type:
Location: 1714937 - 1715278 (+)
Type:
Location: 1714937 - 1715278 (+)
Gene ID: A72_contig_1503_1399
Type: TC
Location: 1715351 - 1717075 (+)
Type: TC
Location: 1715351 - 1717075 (+)
Gene ID: A72_contig_1503_1400
Type: TC
Location: 1717213 - 1718571 (-)
Type: TC
Location: 1717213 - 1718571 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium animalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.