Cluster: A72.CMAG_1_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: alpha-glucan/galactan
- Genome ID: A72.CMAG_1
- CGC Family ID: CGCFAM_00583
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A72_contig_1503 | A72_contig_1503_12 | 22036 | 23871 | - | GH13_31 |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_13 | 23950 | 24078 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A72_contig_1503 | A72_contig_1503_14 | 24672 | 25628 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A72_contig_1503 | A72_contig_1503_15 | 26069 | 27961 | - | GH36 |
| TC | A72_contig_1503 | A72_contig_1503_16 | 28914 | 29819 | - | 3.A.1.1.28 |
| TC | A72_contig_1503 | A72_contig_1503_17 | 29824 | 30816 | - | 3.A.1.1.28 |
| TC | A72_contig_1503 | A72_contig_1503_18 | 30850 | 32145 | - | 3.A.1.1.3 |
| pfam | A72_contig_1503 | A72_contig_1503_19 | 32294 | 33502 | + | ROK |
| CAZyme | A72_contig_1503 | A72_contig_1503_20 | 33527 | 35749 | - | GH36 |
| pfam | A72_contig_1503 | A72_contig_1503_21 | 35865 | 36323 | - | dCMP_cyt_deam_1 | MafB19-deam |
| TC | A72_contig_1503 | A72_contig_1503_22 | 36524 | 38596 | + | 2.A.36.3.2 |
Gene ID: A72_contig_1503_12
Type: CAZyme
Location: 22036 - 23871 (-)
Type: CAZyme
Location: 22036 - 23871 (-)
Gene ID: A72_contig_1503_13
Type:
Location: 23950 - 24078 (-)
Type:
Location: 23950 - 24078 (-)
Gene ID: A72_contig_1503_14
Type:
Location: 24672 - 25628 (+)
Type:
Location: 24672 - 25628 (+)
Gene ID: A72_contig_1503_15
Type: CAZyme
Location: 26069 - 27961 (-)
Type: CAZyme
Location: 26069 - 27961 (-)
Gene ID: A72_contig_1503_16
Type: TC
Location: 28914 - 29819 (-)
Type: TC
Location: 28914 - 29819 (-)
Gene ID: A72_contig_1503_17
Type: TC
Location: 29824 - 30816 (-)
Type: TC
Location: 29824 - 30816 (-)
Gene ID: A72_contig_1503_18
Type: TC
Location: 30850 - 32145 (-)
Type: TC
Location: 30850 - 32145 (-)
Gene ID: A72_contig_1503_19
Type: pfam
Location: 32294 - 33502 (+)
Type: pfam
Location: 32294 - 33502 (+)
Gene ID: A72_contig_1503_20
Type: CAZyme
Location: 33527 - 35749 (-)
Type: CAZyme
Location: 33527 - 35749 (-)
Gene ID: A72_contig_1503_21
Type: pfam
Location: 35865 - 36323 (-)
Type: pfam
Location: 35865 - 36323 (-)
Gene ID: A72_contig_1503_22
Type: TC
Location: 36524 - 38596 (+)
Type: TC
Location: 36524 - 38596 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium animalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A72_contig_1503_17 | vegan > omnivore | 1.10066 | 0.02464 |
| A72_contig_1503_17 | vegetarian > omnivore | 1.08580 | 0.01867 |