Cluster: A64.bin_1_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A64.bin_1
- CGC Family ID: CGCFAM_00553
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A64_contig_5226 | A64_contig_5226_477 | 566537 | 567070 | - | 3.D.1.8.1 |
| pfam | A64_contig_5226 | A64_contig_5226_478 | 567476 | 568816 | - | TRAM | tRNA_U5-meth_tr | tRNA_U5-meth_tr |
| pfam | A64_contig_5226 | A64_contig_5226_479 | 569105 | 569515 | - | GtrA_DPMS_TM |
| CAZyme | A64_contig_5226 | A64_contig_5226_480 | 569853 | 570830 | + | GT81 |
| CAZyme | A64_contig_5226 | A64_contig_5226_481 | 571236 | 572579 | + | GT28 |
| TC | A64_contig_5226 | A64_contig_5226_482 | 572612 | 574126 | + | 1.I.1.1.3 |
Gene ID: A64_contig_5226_477
Type: TC
Location: 566537 - 567070 (-)
Type: TC
Location: 566537 - 567070 (-)
Gene ID: A64_contig_5226_478
Type: pfam
Location: 567476 - 568816 (-)
Type: pfam
Location: 567476 - 568816 (-)
Gene ID: A64_contig_5226_479
Type: pfam
Location: 569105 - 569515 (-)
Type: pfam
Location: 569105 - 569515 (-)
Gene ID: A64_contig_5226_480
Type: CAZyme
Location: 569853 - 570830 (+)
Type: CAZyme
Location: 569853 - 570830 (+)
Gene ID: A64_contig_5226_481
Type: CAZyme
Location: 571236 - 572579 (+)
Type: CAZyme
Location: 571236 - 572579 (+)
Gene ID: A64_contig_5226_482
Type: TC
Location: 572612 - 574126 (+)
Type: TC
Location: 572612 - 574126 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Senegalimassilia
Species
Senegalimassilia anaerobia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A64_contig_5226_478 | vegetarian > omnivore | 2.17819 | 0.00230 |