Cluster: A58.bin_1_CGC31
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 5
- Substrate:
- Genome ID: A58.bin_1
- CGC Family ID: CGCFAM_00122
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A58_contig_103 | A58_contig_103_1802 | 2006394 | 2007314 | + | 3.A.1.124.3 |
| pfam | A58_contig_103 | A58_contig_103_1803 | 2007343 | 2008098 | + | ABC2_membrane_4 |
| pfam | A58_contig_103 | A58_contig_103_1804 | 2008102 | 2008836 | + | ABC2_membrane_4 |
| CAZyme | A58_contig_103 | A58_contig_103_1805 | 2009006 | 2009743 | + | GT51 |
| TC | A58_contig_103 | A58_contig_103_1806 | 2010284 | 2011327 | + | 3.A.1.2.3 |
| TC | A58_contig_103 | A58_contig_103_1807 | 2011513 | 2013054 | + | 3.A.1.2.3 |
| TC | A58_contig_103 | A58_contig_103_1808 | 2013074 | 2014072 | + | 3.A.1.2.3 |
| NULL(UNKNOWN) | A58_contig_103 | A58_contig_103_1809 | 2014178 | 2014495 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A58_contig_103 | A58_contig_103_1810 | 2014728 | 2016098 | - | 2.A.40.7.2 |
| NULL(UNKNOWN) | A58_contig_103 | A58_contig_103_1811 | 2016364 | 2016705 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A58_contig_103 | A58_contig_103_1812 | 2016736 | 2017098 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A58_contig_103 | A58_contig_103_1813 | 2017312 | 2020332 | - | GH2 |
| CAZyme | A58_contig_103 | A58_contig_103_1814 | 2020319 | 2022013 | - | GH154 |
| CAZyme | A58_contig_103 | A58_contig_103_1815 | 2022013 | 2023176 | - | GH88 |
| TC | A58_contig_103 | A58_contig_103_1816 | 2023282 | 2024142 | - | 3.A.1.1.11 |
| TC | A58_contig_103 | A58_contig_103_1817 | 2024161 | 2025075 | - | 3.A.1.1.20 |
| STP | A58_contig_103 | A58_contig_103_1818 | 2025194 | 2026519 | - | SBP_bac_1 |
| TC | A58_contig_103 | A58_contig_103_1819 | 2026856 | 2028682 | + | 8.A.59.2.1 |
| TF | A58_contig_103 | A58_contig_103_1820 | 2028654 | 2029919 | + | HTH_AraC | HTH_AraC |
| CAZyme | A58_contig_103 | A58_contig_103_1821 | 2029953 | 2031749 | + | PL33_1 |
Gene ID: A58_contig_103_1802
Type: TC
Location: 2006394 - 2007314 (+)
Type: TC
Location: 2006394 - 2007314 (+)
Gene ID: A58_contig_103_1803
Type: pfam
Location: 2007343 - 2008098 (+)
Type: pfam
Location: 2007343 - 2008098 (+)
Gene ID: A58_contig_103_1804
Type: pfam
Location: 2008102 - 2008836 (+)
Type: pfam
Location: 2008102 - 2008836 (+)
Gene ID: A58_contig_103_1805
Type: CAZyme
Location: 2009006 - 2009743 (+)
Type: CAZyme
Location: 2009006 - 2009743 (+)
Gene ID: A58_contig_103_1806
Type: TC
Location: 2010284 - 2011327 (+)
Type: TC
Location: 2010284 - 2011327 (+)
Gene ID: A58_contig_103_1807
Type: TC
Location: 2011513 - 2013054 (+)
Type: TC
Location: 2011513 - 2013054 (+)
Gene ID: A58_contig_103_1808
Type: TC
Location: 2013074 - 2014072 (+)
Type: TC
Location: 2013074 - 2014072 (+)
Gene ID: A58_contig_103_1809
Type:
Location: 2014178 - 2014495 (-)
Type:
Location: 2014178 - 2014495 (-)
Gene ID: A58_contig_103_1810
Type: TC
Location: 2014728 - 2016098 (-)
Type: TC
Location: 2014728 - 2016098 (-)
Gene ID: A58_contig_103_1811
Type:
Location: 2016364 - 2016705 (-)
Type:
Location: 2016364 - 2016705 (-)
Gene ID: A58_contig_103_1812
Type:
Location: 2016736 - 2017098 (-)
Type:
Location: 2016736 - 2017098 (-)
Gene ID: A58_contig_103_1813
Type: CAZyme
Location: 2017312 - 2020332 (-)
Type: CAZyme
Location: 2017312 - 2020332 (-)
Gene ID: A58_contig_103_1814
Type: CAZyme
Location: 2020319 - 2022013 (-)
Type: CAZyme
Location: 2020319 - 2022013 (-)
Gene ID: A58_contig_103_1815
Type: CAZyme
Location: 2022013 - 2023176 (-)
Type: CAZyme
Location: 2022013 - 2023176 (-)
Gene ID: A58_contig_103_1816
Type: TC
Location: 2023282 - 2024142 (-)
Type: TC
Location: 2023282 - 2024142 (-)
Gene ID: A58_contig_103_1817
Type: TC
Location: 2024161 - 2025075 (-)
Type: TC
Location: 2024161 - 2025075 (-)
Gene ID: A58_contig_103_1818
Type: STP
Location: 2025194 - 2026519 (-)
Type: STP
Location: 2025194 - 2026519 (-)
Gene ID: A58_contig_103_1819
Type: TC
Location: 2026856 - 2028682 (+)
Type: TC
Location: 2026856 - 2028682 (+)
Gene ID: A58_contig_103_1820
Type: TF
Location: 2028654 - 2029919 (+)
Type: TF
Location: 2028654 - 2029919 (+)
Gene ID: A58_contig_103_1821
Type: CAZyme
Location: 2029953 - 2031749 (+)
Type: CAZyme
Location: 2029953 - 2031749 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900540455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.