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Cluster: A58.bin_1_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A58_contig_103 A58_contig_103_1641 1816247 1817653 - GH32
TC A58_contig_103 A58_contig_103_1642 1817655 1819040 - 4.A.1.2.1
TF A58_contig_103 A58_contig_103_1643 1819201 1820232 - LacI
TC A58_contig_103 A58_contig_103_1644 1820360 1821664 + 2.A.66.1.37
TF A58_contig_103 A58_contig_103_1645 1821709 1822530 - HTH_AraC | HTH_AraC
TC A58_contig_103 A58_contig_103_1646 1822663 1823778 + 3.A.1.1.26
TC A58_contig_103 A58_contig_103_1647 1823965 1825299 + 2.A.38.4.1
TC A58_contig_103 A58_contig_103_1648 1825369 1826016 + 2.A.38.4.6
NULL(UNKNOWN) A58_contig_103 A58_contig_103_1649 1826062 1826316 + NULL(UNKNOWN)
[View Structural Homologs]
TC A58_contig_103 A58_contig_103_1650 1826480 1828456 + 2.A.21.9.2
Gene ID: A58_contig_103_1641
Type: CAZyme
Location: 1816247 - 1817653 (-)
Gene ID: A58_contig_103_1642
Type: TC
Location: 1817655 - 1819040 (-)
Gene ID: A58_contig_103_1643
Type: TF
Location: 1819201 - 1820232 (-)
Gene ID: A58_contig_103_1644
Type: TC
Location: 1820360 - 1821664 (+)
Gene ID: A58_contig_103_1645
Type: TF
Location: 1821709 - 1822530 (-)
Gene ID: A58_contig_103_1646
Type: TC
Location: 1822663 - 1823778 (+)
Gene ID: A58_contig_103_1647
Type: TC
Location: 1823965 - 1825299 (+)
Gene ID: A58_contig_103_1648
Type: TC
Location: 1825369 - 1826016 (+)
Gene ID: A58_contig_103_1649
Type:
Location: 1826062 - 1826316 (+)
Gene ID: A58_contig_103_1650
Type: TC
Location: 1826480 - 1828456 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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