Cluster: A58.bin_1_CGC12
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: A58.bin_1
- CGC Family ID: CGCFAM_01236
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A58_contig_103 | A58_contig_103_772 | 838382 | 840061 | + | 3.A.1.1.9 |
| TC | A58_contig_103 | A58_contig_103_773 | 840080 | 840982 | + | 3.A.1.1.9 |
| TC | A58_contig_103 | A58_contig_103_774 | 840999 | 841874 | + | 3.A.1.1.9 |
| CAZyme | A58_contig_103 | A58_contig_103_775 | 841959 | 843917 | + | GH31_1 |
| CAZyme | A58_contig_103 | A58_contig_103_776 | 843930 | 845588 | + | GH13_31 |
| TC | A58_contig_103 | A58_contig_103_777 | 845604 | 846263 | + | 9.B.28.1.2 |
| pfam | A58_contig_103 | A58_contig_103_778 | 846512 | 846877 | - | Recombinase |
| CAZyme | A58_contig_103 | A58_contig_103_779 | 847452 | 848927 | - | GH32 |
| STP | A58_contig_103 | A58_contig_103_780 | 848952 | 850625 | - | SBP_bac_1 |
| TC | A58_contig_103 | A58_contig_103_781 | 850702 | 851607 | - | 3.A.1.1.10 |
| TC | A58_contig_103 | A58_contig_103_782 | 851621 | 852568 | - | 3.A.1.1.10 |
| TF | A58_contig_103 | A58_contig_103_783 | 852911 | 853966 | + | LacI |
| TC | A58_contig_103 | A58_contig_103_784 | 853984 | 854634 | + | 9.B.28.1.2 |
| NULL(UNKNOWN) | A58_contig_103 | A58_contig_103_785 | 854621 | 855238 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | A58_contig_103 | A58_contig_103_786 | 855282 | 856214 | + | PfkB |
| CAZyme | A58_contig_103 | A58_contig_103_787 | 856218 | 858041 | + | GH13_4 |
Gene ID: A58_contig_103_772
Type: TC
Location: 838382 - 840061 (+)
Type: TC
Location: 838382 - 840061 (+)
Gene ID: A58_contig_103_773
Type: TC
Location: 840080 - 840982 (+)
Type: TC
Location: 840080 - 840982 (+)
Gene ID: A58_contig_103_774
Type: TC
Location: 840999 - 841874 (+)
Type: TC
Location: 840999 - 841874 (+)
Gene ID: A58_contig_103_775
Type: CAZyme
Location: 841959 - 843917 (+)
Type: CAZyme
Location: 841959 - 843917 (+)
Gene ID: A58_contig_103_776
Type: CAZyme
Location: 843930 - 845588 (+)
Type: CAZyme
Location: 843930 - 845588 (+)
Gene ID: A58_contig_103_777
Type: TC
Location: 845604 - 846263 (+)
Type: TC
Location: 845604 - 846263 (+)
Gene ID: A58_contig_103_778
Type: pfam
Location: 846512 - 846877 (-)
Type: pfam
Location: 846512 - 846877 (-)
Gene ID: A58_contig_103_779
Type: CAZyme
Location: 847452 - 848927 (-)
Type: CAZyme
Location: 847452 - 848927 (-)
Gene ID: A58_contig_103_780
Type: STP
Location: 848952 - 850625 (-)
Type: STP
Location: 848952 - 850625 (-)
Gene ID: A58_contig_103_781
Type: TC
Location: 850702 - 851607 (-)
Type: TC
Location: 850702 - 851607 (-)
Gene ID: A58_contig_103_782
Type: TC
Location: 851621 - 852568 (-)
Type: TC
Location: 851621 - 852568 (-)
Gene ID: A58_contig_103_783
Type: TF
Location: 852911 - 853966 (+)
Type: TF
Location: 852911 - 853966 (+)
Gene ID: A58_contig_103_784
Type: TC
Location: 853984 - 854634 (+)
Type: TC
Location: 853984 - 854634 (+)
Gene ID: A58_contig_103_785
Type:
Location: 854621 - 855238 (+)
Type:
Location: 854621 - 855238 (+)
Gene ID: A58_contig_103_786
Type: STP
Location: 855282 - 856214 (+)
Type: STP
Location: 855282 - 856214 (+)
Gene ID: A58_contig_103_787
Type: CAZyme
Location: 856218 - 858041 (+)
Type: CAZyme
Location: 856218 - 858041 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900540455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.