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Cluster: A46.bin_5_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A46_contig_840 A46_contig_840_203 225412 226620 - GH109
TF A46_contig_840 A46_contig_840_204 226800 227660 + HTH_AraC
TF A46_contig_840 A46_contig_840_205 227777 228913 + GntR
TC A46_contig_840 A46_contig_840_206 229140 230060 + 3.A.1.1.10
TC A46_contig_840 A46_contig_840_207 230060 230944 + 3.A.1.1.29
STP A46_contig_840 A46_contig_840_208 230994 232529 + SBP_bac_1
CAZyme A46_contig_840 A46_contig_840_209 232608 235127 + GH2
NULL(UNKNOWN) A46_contig_840 A46_contig_840_210 235272 235628 + NULL(UNKNOWN)
[View Structural Homologs]
TC A46_contig_840 A46_contig_840_211 235648 237504 + 3.A.1.120.6
TC A46_contig_840 A46_contig_840_212 237643 239436 + 3.A.1.111.4
peptidase A46_contig_840 A46_contig_840_213 239483 240358 + M24.UPA
pfam A46_contig_840 A46_contig_840_214 240412 241242 - SpoU_methylase
CAZyme A46_contig_840 A46_contig_840_215 241251 243026 - GH2
Gene ID: A46_contig_840_203
Type: CAZyme
Location: 225412 - 226620 (-)
Gene ID: A46_contig_840_204
Type: TF
Location: 226800 - 227660 (+)
Gene ID: A46_contig_840_205
Type: TF
Location: 227777 - 228913 (+)
Gene ID: A46_contig_840_206
Type: TC
Location: 229140 - 230060 (+)
Gene ID: A46_contig_840_207
Type: TC
Location: 230060 - 230944 (+)
Gene ID: A46_contig_840_208
Type: STP
Location: 230994 - 232529 (+)
Gene ID: A46_contig_840_209
Type: CAZyme
Location: 232608 - 235127 (+)
Gene ID: A46_contig_840_210
Type:
Location: 235272 - 235628 (+)
Gene ID: A46_contig_840_211
Type: TC
Location: 235648 - 237504 (+)
Gene ID: A46_contig_840_212
Type: TC
Location: 237643 - 239436 (+)
Gene ID: A46_contig_840_213
Type: peptidase
Location: 239483 - 240358 (+)
Gene ID: A46_contig_840_214
Type: pfam
Location: 240412 - 241242 (-)
Gene ID: A46_contig_840_215
Type: CAZyme
Location: 241251 - 243026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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