Cluster: A46.bin_5_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: A46.bin_5
- CGC Family ID: CGCFAM_04419
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A46_contig_840 | A46_contig_840_1271 | 1437399 | 1439270 | + | GH20 |
| CAZyme | A46_contig_840 | A46_contig_840_1272 | 1439303 | 1440577 | + | GH177 |
| TF | A46_contig_840 | A46_contig_840_1273 | 1440633 | 1441550 | - | HTH_AraC | HTH_AraC |
| TC | A46_contig_840 | A46_contig_840_1274 | 1441558 | 1442448 | - | 3.A.1.1.18 |
| TC | A46_contig_840 | A46_contig_840_1275 | 1442460 | 1443359 | - | 3.A.1.1.25 |
| STP | A46_contig_840 | A46_contig_840_1276 | 1443479 | 1444837 | - | SBP_bac_1 |
| pfam | A46_contig_840 | A46_contig_840_1277 | 1445005 | 1445928 | - | DHDPS |
| CAZyme | A46_contig_840 | A46_contig_840_1278 | 1445971 | 1446957 | - | GH33 |
| TF | A46_contig_840 | A46_contig_840_1279 | 1446988 | 1449303 | - | HTH_AraC | HTH_AraC |
| STP | A46_contig_840 | A46_contig_840_1280 | 1449400 | 1451049 | - | SBP_bac_1 |
| TC | A46_contig_840 | A46_contig_840_1281 | 1451110 | 1452012 | - | 3.A.1.1.29 |
| TC | A46_contig_840 | A46_contig_840_1282 | 1452032 | 1452985 | - | 3.A.1.1.10 |
Gene ID: A46_contig_840_1271
Type: CAZyme
Location: 1437399 - 1439270 (+)
Type: CAZyme
Location: 1437399 - 1439270 (+)
Gene ID: A46_contig_840_1272
Type: CAZyme
Location: 1439303 - 1440577 (+)
Type: CAZyme
Location: 1439303 - 1440577 (+)
Gene ID: A46_contig_840_1273
Type: TF
Location: 1440633 - 1441550 (-)
Type: TF
Location: 1440633 - 1441550 (-)
Gene ID: A46_contig_840_1274
Type: TC
Location: 1441558 - 1442448 (-)
Type: TC
Location: 1441558 - 1442448 (-)
Gene ID: A46_contig_840_1275
Type: TC
Location: 1442460 - 1443359 (-)
Type: TC
Location: 1442460 - 1443359 (-)
Gene ID: A46_contig_840_1276
Type: STP
Location: 1443479 - 1444837 (-)
Type: STP
Location: 1443479 - 1444837 (-)
Gene ID: A46_contig_840_1277
Type: pfam
Location: 1445005 - 1445928 (-)
Type: pfam
Location: 1445005 - 1445928 (-)
Gene ID: A46_contig_840_1278
Type: CAZyme
Location: 1445971 - 1446957 (-)
Type: CAZyme
Location: 1445971 - 1446957 (-)
Gene ID: A46_contig_840_1279
Type: TF
Location: 1446988 - 1449303 (-)
Type: TF
Location: 1446988 - 1449303 (-)
Gene ID: A46_contig_840_1280
Type: STP
Location: 1449400 - 1451049 (-)
Type: STP
Location: 1449400 - 1451049 (-)
Gene ID: A46_contig_840_1281
Type: TC
Location: 1451110 - 1452012 (-)
Type: TC
Location: 1451110 - 1452012 (-)
Gene ID: A46_contig_840_1282
Type: TC
Location: 1452032 - 1452985 (-)
Type: TC
Location: 1452032 - 1452985 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Gallintestinimicrobium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.