Cluster: A43.bin_3_CGC98
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_04413
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_185 | A43_contig_185_1442 | 1726571 | 1729048 | - | 1.B.14.6.5 |
| NULL(UNKNOWN) | A43_contig_185 | A43_contig_185_1443 | 1729231 | 1729836 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A43_contig_185 | A43_contig_185_1444 | 1729971 | 1732055 | - | GH3 |
| pfam | A43_contig_185 | A43_contig_185_1445 | 1732123 | 1733694 | - | PKD | PKD | Laminin_G_3 | PKD_4 | PKD_4 |
| CAZyme | A43_contig_185 | A43_contig_185_1446 | 1733713 | 1734873 | - | GH33 |
| TC | A43_contig_185 | A43_contig_185_1447 | 1734860 | 1736314 | - | 8.A.46.1.1 |
| TC | A43_contig_185 | A43_contig_185_1448 | 1736334 | 1739618 | - | 1.B.14.6.1 |
| TC | A43_contig_185 | A43_contig_185_1449 | 1739644 | 1740876 | - | 2.A.1.14.14 |
| CAZyme | A43_contig_185 | A43_contig_185_1450 | 1740883 | 1742523 | - | GH33 |
Gene ID: A43_contig_185_1442
Type: TC
Location: 1726571 - 1729048 (-)
Type: TC
Location: 1726571 - 1729048 (-)
Gene ID: A43_contig_185_1443
Type:
Location: 1729231 - 1729836 (-)
Type:
Location: 1729231 - 1729836 (-)
Gene ID: A43_contig_185_1444
Type: CAZyme
Location: 1729971 - 1732055 (-)
Type: CAZyme
Location: 1729971 - 1732055 (-)
Gene ID: A43_contig_185_1445
Type: pfam
Location: 1732123 - 1733694 (-)
Type: pfam
Location: 1732123 - 1733694 (-)
Gene ID: A43_contig_185_1446
Type: CAZyme
Location: 1733713 - 1734873 (-)
Type: CAZyme
Location: 1733713 - 1734873 (-)
Gene ID: A43_contig_185_1447
Type: TC
Location: 1734860 - 1736314 (-)
Type: TC
Location: 1734860 - 1736314 (-)
Gene ID: A43_contig_185_1448
Type: TC
Location: 1736334 - 1739618 (-)
Type: TC
Location: 1736334 - 1739618 (-)
Gene ID: A43_contig_185_1449
Type: TC
Location: 1739644 - 1740876 (-)
Type: TC
Location: 1739644 - 1740876 (-)
Gene ID: A43_contig_185_1450
Type: CAZyme
Location: 1740883 - 1742523 (-)
Type: CAZyme
Location: 1740883 - 1742523 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_185_1445 | vegan > omnivore | 1.52313 | 0.00290 |
| A43_contig_185_1446 | vegan > omnivore | 2.14891 | 0.00290 |
| A43_contig_185_1447 | vegan > omnivore | 1.12282 | 0.00290 |
| A43_contig_185_1448 | vegan > omnivore | 1.35341 | 0.00290 |
| A43_contig_185_1449 | vegan > omnivore | 1.64965 | 0.00290 |
| A43_contig_185_1450 | vegan > omnivore | 1.38518 | 0.00290 |