Cluster: A43.bin_3_CGC96
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_03109
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_185 | A43_contig_185_1182 | 1439652 | 1441757 | + | 9.B.14.3.1 |
| STP | A43_contig_185 | A43_contig_185_1183 | 1442077 | 1442685 | - | TetR_N |
| pfam | A43_contig_185 | A43_contig_185_1184 | 1442730 | 1444274 | - | DUF772 | DDE_Tnp_1_2 |
| TC | A43_contig_185 | A43_contig_185_1185 | 1444330 | 1446069 | - | 3.A.1.135.5 |
| TC | A43_contig_185 | A43_contig_185_1186 | 1446062 | 1447804 | - | 3.A.1.21.1 |
| CAZyme | A43_contig_185 | A43_contig_185_1187 | 1448147 | 1450453 | - | GH20 |
| TC | A43_contig_185 | A43_contig_185_1188 | 1450643 | 1451557 | + | 2.A.4.7.6 |
| TC | A43_contig_185 | A43_contig_185_1189 | 1451893 | 1454232 | - | 1.B.14.1.4 |
| NULL(UNKNOWN) | A43_contig_185 | A43_contig_185_1190 | 1454345 | 1454662 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_185 | A43_contig_185_1191 | 1454811 | 1457132 | - | 1.B.14.1.4 |
| NULL(UNKNOWN) | A43_contig_185 | A43_contig_185_1192 | 1457217 | 1457597 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_185 | A43_contig_185_1193 | 1457644 | 1459242 | - | 2.A.81.1.2 |
| TC | A43_contig_185 | A43_contig_185_1194 | 1459290 | 1460192 | - | 2.A.4.1.7 |
Gene ID: A43_contig_185_1182
Type: TC
Location: 1439652 - 1441757 (+)
Type: TC
Location: 1439652 - 1441757 (+)
Gene ID: A43_contig_185_1183
Type: STP
Location: 1442077 - 1442685 (-)
Type: STP
Location: 1442077 - 1442685 (-)
Gene ID: A43_contig_185_1184
Type: pfam
Location: 1442730 - 1444274 (-)
Type: pfam
Location: 1442730 - 1444274 (-)
Gene ID: A43_contig_185_1185
Type: TC
Location: 1444330 - 1446069 (-)
Type: TC
Location: 1444330 - 1446069 (-)
Gene ID: A43_contig_185_1186
Type: TC
Location: 1446062 - 1447804 (-)
Type: TC
Location: 1446062 - 1447804 (-)
Gene ID: A43_contig_185_1187
Type: CAZyme
Location: 1448147 - 1450453 (-)
Type: CAZyme
Location: 1448147 - 1450453 (-)
Gene ID: A43_contig_185_1188
Type: TC
Location: 1450643 - 1451557 (+)
Type: TC
Location: 1450643 - 1451557 (+)
Gene ID: A43_contig_185_1189
Type: TC
Location: 1451893 - 1454232 (-)
Type: TC
Location: 1451893 - 1454232 (-)
Gene ID: A43_contig_185_1190
Type:
Location: 1454345 - 1454662 (-)
Type:
Location: 1454345 - 1454662 (-)
Gene ID: A43_contig_185_1191
Type: TC
Location: 1454811 - 1457132 (-)
Type: TC
Location: 1454811 - 1457132 (-)
Gene ID: A43_contig_185_1192
Type:
Location: 1457217 - 1457597 (-)
Type:
Location: 1457217 - 1457597 (-)
Gene ID: A43_contig_185_1193
Type: TC
Location: 1457644 - 1459242 (-)
Type: TC
Location: 1457644 - 1459242 (-)
Gene ID: A43_contig_185_1194
Type: TC
Location: 1459290 - 1460192 (-)
Type: TC
Location: 1459290 - 1460192 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_185_1183 | vegan > omnivore | 1.19502 | 0.00290 |
| A43_contig_185_1183 | vegetarian > omnivore | 1.42984 | 0.02224 |
| A43_contig_185_1185 | vegetarian > omnivore | 1.04353 | 0.03791 |
| A43_contig_185_1186 | vegan > omnivore | 1.45518 | 0.00290 |
| A43_contig_185_1186 | vegetarian > omnivore | 1.45077 | 0.01178 |