Cluster: A43.bin_3_CGC87
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00479
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_185 | A43_contig_185_628 | 751103 | 752242 | - | GH18 |
| TC | A43_contig_185 | A43_contig_185_629 | 752270 | 753820 | - | 8.A.46.2.1 |
| TC | A43_contig_185 | A43_contig_185_630 | 753838 | 757140 | - | 1.B.14.6.13 |
| NULL(UNKNOWN) | A43_contig_185 | A43_contig_185_631 | 757183 | 757284 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A43_contig_185 | A43_contig_185_632 | 757518 | 758753 | + | Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| TC | A43_contig_185 | A43_contig_185_633 | 759378 | 762206 | + | 1.B.14.6.13 |
| TC | A43_contig_185 | A43_contig_185_634 | 762225 | 763802 | + | 8.A.46.2.2 |
| CAZyme | A43_contig_185 | A43_contig_185_635 | 763835 | 764899 | + | GH18 |
| pfam | A43_contig_185 | A43_contig_185_636 | 764922 | 766133 | + | BT_3987-like_N | Laminin_G_3 |
| pfam | A43_contig_185 | A43_contig_185_637 | 766157 | 767122 | + | F5_F8_type_C | BT_3987-like_N | F5_F8_type_C_2 |
| CAZyme | A43_contig_185 | A43_contig_185_638 | 767287 | 769488 | + | GH163 |
| pfam | A43_contig_185 | A43_contig_185_639 | 769587 | 770915 | + | MFS_1 | MFS_1 |
| CAZyme | A43_contig_185 | A43_contig_185_640 | 770932 | 771900 | + | GH130_2 |
| CAZyme | A43_contig_185 | A43_contig_185_641 | 771908 | 774181 | + | GH92 |
| pfam | A43_contig_185 | A43_contig_185_642 | 774483 | 775376 | + | AP_endonuc_2 |
| pfam | A43_contig_185 | A43_contig_185_643 | 775536 | 776972 | + | DUF4957 | DUF4992 | DUF5123 |
| TC | A43_contig_185 | A43_contig_185_644 | 777002 | 780388 | + | 1.B.14.6.1 |
Gene ID: A43_contig_185_628
Type: CAZyme
Location: 751103 - 752242 (-)
Type: CAZyme
Location: 751103 - 752242 (-)
Gene ID: A43_contig_185_629
Type: TC
Location: 752270 - 753820 (-)
Type: TC
Location: 752270 - 753820 (-)
Gene ID: A43_contig_185_630
Type: TC
Location: 753838 - 757140 (-)
Type: TC
Location: 753838 - 757140 (-)
Gene ID: A43_contig_185_631
Type:
Location: 757183 - 757284 (-)
Type:
Location: 757183 - 757284 (-)
Gene ID: A43_contig_185_632
Type: pfam
Location: 757518 - 758753 (+)
Type: pfam
Location: 757518 - 758753 (+)
Gene ID: A43_contig_185_633
Type: TC
Location: 759378 - 762206 (+)
Type: TC
Location: 759378 - 762206 (+)
Gene ID: A43_contig_185_634
Type: TC
Location: 762225 - 763802 (+)
Type: TC
Location: 762225 - 763802 (+)
Gene ID: A43_contig_185_635
Type: CAZyme
Location: 763835 - 764899 (+)
Type: CAZyme
Location: 763835 - 764899 (+)
Gene ID: A43_contig_185_636
Type: pfam
Location: 764922 - 766133 (+)
Type: pfam
Location: 764922 - 766133 (+)
Gene ID: A43_contig_185_637
Type: pfam
Location: 766157 - 767122 (+)
Type: pfam
Location: 766157 - 767122 (+)
Gene ID: A43_contig_185_638
Type: CAZyme
Location: 767287 - 769488 (+)
Type: CAZyme
Location: 767287 - 769488 (+)
Gene ID: A43_contig_185_639
Type: pfam
Location: 769587 - 770915 (+)
Type: pfam
Location: 769587 - 770915 (+)
Gene ID: A43_contig_185_640
Type: CAZyme
Location: 770932 - 771900 (+)
Type: CAZyme
Location: 770932 - 771900 (+)
Gene ID: A43_contig_185_641
Type: CAZyme
Location: 771908 - 774181 (+)
Type: CAZyme
Location: 771908 - 774181 (+)
Gene ID: A43_contig_185_642
Type: pfam
Location: 774483 - 775376 (+)
Type: pfam
Location: 774483 - 775376 (+)
Gene ID: A43_contig_185_643
Type: pfam
Location: 775536 - 776972 (+)
Type: pfam
Location: 775536 - 776972 (+)
Gene ID: A43_contig_185_644
Type: TC
Location: 777002 - 780388 (+)
Type: TC
Location: 777002 - 780388 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_185_628 | vegan > omnivore | 1.54738 | 0.00290 |
| A43_contig_185_631 | vegan > omnivore | 1.46598 | 0.00290 |
| A43_contig_185_632 | vegan > omnivore | 1.90458 | 0.00290 |
| A43_contig_185_632 | vegetarian > omnivore | 1.23466 | 0.02936 |
| A43_contig_185_633 | vegetarian > omnivore | 1.32495 | 0.03791 |
| A43_contig_185_633 | vegan > omnivore | 1.77628 | 0.00290 |
| A43_contig_185_634 | vegetarian > omnivore | 1.21849 | 0.02224 |
| A43_contig_185_634 | vegan > omnivore | 1.81557 | 0.00290 |
| A43_contig_185_635 | vegan > omnivore | 1.24455 | 0.00290 |
| A43_contig_185_636 | vegan > omnivore | 1.08644 | 0.00290 |
| A43_contig_185_637 | vegan > omnivore | 1.33126 | 0.00290 |