Cluster: A43.bin_3_CGC84
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00985
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_185 | A43_contig_185_460 | 539903 | 543220 | + | 1.B.14.6.1 |
| TC | A43_contig_185 | A43_contig_185_461 | 543250 | 544839 | + | 8.A.46.1.4 |
| CAZyme | A43_contig_185 | A43_contig_185_462 | 544981 | 546654 | + | CBM93 | GH33 |
| CAZyme | A43_contig_185 | A43_contig_185_463 | 546678 | 548696 | + | GH20 |
| sulfatase | A43_contig_185 | A43_contig_185_464 | 548842 | 549507 | + | S1_16 |
| CAZyme | A43_contig_185 | A43_contig_185_465 | 549556 | 552732 | + | CE20 |
| CAZyme | A43_contig_185 | A43_contig_185_466 | 552778 | 555447 | + | GH2 |
| CAZyme | A43_contig_185 | A43_contig_185_467 | 555482 | 557806 | + | GH20 |
| CAZyme | A43_contig_185 | A43_contig_185_468 | 557806 | 559881 | + | GH20 |
| TC | A43_contig_185 | A43_contig_185_469 | 560077 | 562821 | + | 1.B.14.6.1 |
| TC | A43_contig_185 | A43_contig_185_470 | 562836 | 564521 | + | 8.A.46.1.1 |
| pfam | A43_contig_185 | A43_contig_185_471 | 564531 | 565670 | - | DNA_alkylation |
| pfam | A43_contig_185 | A43_contig_185_472 | 565984 | 567180 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | A43_contig_185 | A43_contig_185_473 | 567280 | 567861 | - | 3.A.8.1.1 |
| TC | A43_contig_185 | A43_contig_185_474 | 568193 | 569812 | + | 3.A.1.121.4 |
Gene ID: A43_contig_185_460
Type: TC
Location: 539903 - 543220 (+)
Type: TC
Location: 539903 - 543220 (+)
Gene ID: A43_contig_185_461
Type: TC
Location: 543250 - 544839 (+)
Type: TC
Location: 543250 - 544839 (+)
Gene ID: A43_contig_185_462
Type: CAZyme
Location: 544981 - 546654 (+)
Type: CAZyme
Location: 544981 - 546654 (+)
Gene ID: A43_contig_185_463
Type: CAZyme
Location: 546678 - 548696 (+)
Type: CAZyme
Location: 546678 - 548696 (+)
Gene ID: A43_contig_185_464
Type: sulfatase
Location: 548842 - 549507 (+)
Type: sulfatase
Location: 548842 - 549507 (+)
Gene ID: A43_contig_185_465
Type: CAZyme
Location: 549556 - 552732 (+)
Type: CAZyme
Location: 549556 - 552732 (+)
Gene ID: A43_contig_185_466
Type: CAZyme
Location: 552778 - 555447 (+)
Type: CAZyme
Location: 552778 - 555447 (+)
Gene ID: A43_contig_185_467
Type: CAZyme
Location: 555482 - 557806 (+)
Type: CAZyme
Location: 555482 - 557806 (+)
Gene ID: A43_contig_185_468
Type: CAZyme
Location: 557806 - 559881 (+)
Type: CAZyme
Location: 557806 - 559881 (+)
Gene ID: A43_contig_185_469
Type: TC
Location: 560077 - 562821 (+)
Type: TC
Location: 560077 - 562821 (+)
Gene ID: A43_contig_185_470
Type: TC
Location: 562836 - 564521 (+)
Type: TC
Location: 562836 - 564521 (+)
Gene ID: A43_contig_185_471
Type: pfam
Location: 564531 - 565670 (-)
Type: pfam
Location: 564531 - 565670 (-)
Gene ID: A43_contig_185_472
Type: pfam
Location: 565984 - 567180 (-)
Type: pfam
Location: 565984 - 567180 (-)
Gene ID: A43_contig_185_473
Type: TC
Location: 567280 - 567861 (-)
Type: TC
Location: 567280 - 567861 (-)
Gene ID: A43_contig_185_474
Type: TC
Location: 568193 - 569812 (+)
Type: TC
Location: 568193 - 569812 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_185_464 | vegan > omnivore | 3.54404 | 0.00290 |
| A43_contig_185_465 | vegan > omnivore | 1.76599 | 0.00290 |